{"id":"https://openalex.org/W2916251779","doi":"https://doi.org/10.1093/nar/gks1297","title":"The 2013 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection","display_name":"The 2013 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection","publication_year":2012,"publication_date":"2012-11-30","ids":{"openalex":"https://openalex.org/W2916251779","doi":"https://doi.org/10.1093/nar/gks1297","mag":"2916251779","pmid":"https://pubmed.ncbi.nlm.nih.gov/23203983"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1297","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1297","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1/3716371/gks1297.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1/3716371/gks1297.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014883542","display_name":"Xos\u00e9 M. Fern\u00e1ndez","orcid":"https://orcid.org/0000-0001-7139-6215"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I4210146106","display_name":"Nara Prefectural Nara High School","ror":"https://ror.org/03g6saz93","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210146106"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["JP","US"],"is_corresponding":true,"raw_author_name":"Xos\u00e9 M. Fern\u00e1ndez-Su\u00e1rez","raw_affiliation_strings":["nardatabase@gmail.com","Cambridge, CB24 6DZ, UK and 2National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health (NIH), Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"nardatabase@gmail.com","institution_ids":["https://openalex.org/I4210146106"]},{"raw_affiliation_string":"Cambridge, CB24 6DZ, UK and 2National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health (NIH), Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077552473","display_name":"Michael Y. Galperin","orcid":"https://orcid.org/0000-0002-2265-5572"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Y. Galperin","raw_affiliation_strings":["National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health (NIH), Bethesda, MD 20894, USA","Cambridge, CB24 6DZ, UK and 2National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health (NIH), Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health (NIH), Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"Cambridge, CB24 6DZ, UK and 2National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health (NIH), Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5014883542"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390","https://openalex.org/I4210146106"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.084,"has_fulltext":true,"cited_by_count":137,"citation_normalized_percentile":{"value":0.9889598,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D1","last_page":"D7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.7848135232925415},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.67378830909729},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5327017307281494},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5210182666778564},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.44410207867622375},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4360809326171875},{"id":"https://openalex.org/keywords/online-database","display_name":"Online database","score":0.4341464042663574},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4193044900894165},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.41228151321411133},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.292066752910614},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.204409658908844},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1555473804473877}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7848135232925415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.67378830909729},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5327017307281494},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5210182666778564},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.44410207867622375},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4360809326171875},{"id":"https://openalex.org/C2777715827","wikidata":"https://www.wikidata.org/wiki/Q7094076","display_name":"Online database","level":2,"score":0.4341464042663574},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4193044900894165},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.41228151321411133},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.292066752910614},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.204409658908844},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1555473804473877}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gks1297","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1297","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1/3716371/gks1297.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23203983","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23203983","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.816.3937","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.816.3937","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/d3/f7/gks1297.PMC3531151.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2590257","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531151","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1297","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1297","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1/3716371/gks1297.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2916251779.pdf","grobid_xml":"https://content.openalex.org/works/W2916251779.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1965409500","https://openalex.org/W1968630368","https://openalex.org/W1969465720","https://openalex.org/W1976502930","https://openalex.org/W1978594833","https://openalex.org/W1982749428","https://openalex.org/W1987083115","https://openalex.org/W1989800873","https://openalex.org/W1991090079","https://openalex.org/W2001671544","https://openalex.org/W2009511800","https://openalex.org/W2018219462","https://openalex.org/W2034285706","https://openalex.org/W2041908101","https://openalex.org/W2048612925","https://openalex.org/W2055961987","https://openalex.org/W2066178941","https://openalex.org/W2071501400","https://openalex.org/W2073645019","https://openalex.org/W2079971866","https://openalex.org/W2081250686","https://openalex.org/W2086803465","https://openalex.org/W2090146405","https://openalex.org/W2090663694","https://openalex.org/W2096525273","https://openalex.org/W2102994433","https://openalex.org/W2106788283","https://openalex.org/W2107158607","https://openalex.org/W2108068107","https://openalex.org/W2108781775","https://openalex.org/W2117515556","https://openalex.org/W2118961319","https://openalex.org/W2120141270","https://openalex.org/W2121365413","https://openalex.org/W2123026189","https://openalex.org/W2123863402","https://openalex.org/W2124141867","https://openalex.org/W2129420975","https://openalex.org/W2139138803","https://openalex.org/W2142078770","https://openalex.org/W2146235863","https://openalex.org/W2146734921","https://openalex.org/W2149717791","https://openalex.org/W2154189169","https://openalex.org/W2155066423","https://openalex.org/W2156467546","https://openalex.org/W2160344363","https://openalex.org/W2165102934","https://openalex.org/W2166706771","https://openalex.org/W2170463736","https://openalex.org/W2170806980","https://openalex.org/W2605068739","https://openalex.org/W2916022153","https://openalex.org/W2916083703","https://openalex.org/W4210290733","https://openalex.org/W4212920271","https://openalex.org/W4230612844","https://openalex.org/W4230784961","https://openalex.org/W4242729757","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2340204314","https://openalex.org/W4313598112","https://openalex.org/W3128872455","https://openalex.org/W3090971826","https://openalex.org/W2001561488","https://openalex.org/W3047585652","https://openalex.org/W2127106003","https://openalex.org/W2001037326","https://openalex.org/W4247428816","https://openalex.org/W4224273931"],"abstract_inverted_index":{"The":[0,81,159,178],"20th":[1],"annual":[2],"Database":[3,164,183],"Issue":[4,184],"of":[5,13,43,49,60,98,101,124,134,149,181],"Nucleic":[6,191],"Acids":[7,192],"Research":[8,193],"includes":[9],"176":[10],"articles,":[11],"half":[12,24],"which":[14],"describe":[15],"new":[16,138],"online":[17,161,176,188],"molecular":[18],"biology":[19],"databases":[20,29,42,48,56,66,75,100,118,139],"and":[21,34,52,63,69,73,107,115,131,142,172],"the":[22,28,86,96,99,110,121,132,182,190],"other":[23,35,117],"provide":[25],"updates":[26],"on":[27,57,84,120,151,189],"previously":[30],"featured":[31],"in":[32,95],"NAR":[33,160],"journals.":[36],"This":[37],"year's":[38],"highlights":[39],"include":[40],"two":[41],"DNA":[44],"repeat":[45],"elements;":[46],"several":[47,116],"transcriptional":[50,53],"factors":[51],"factor-binding":[54],"sites;":[55],"various":[58],"aspects":[59],"protein":[61],"structure":[62],"protein-protein":[64],"interactions;":[65],"for":[67,145,155],"metagenomic":[68],"rRNA":[70],"sequence":[71],"analysis;":[72],"four":[74],"specifically":[76],"dedicated":[77],"to":[78,89],"Escherichia":[79],"coli.":[80],"increased":[82],"emphasis":[83],"using":[85],"genome":[87],"data":[88,144,150],"improve":[90],"human":[91,125],"health":[92],"is":[93,185],"reflected":[94],"development":[97],"genomic":[102,141],"structural":[103],"variation":[104],"(NCBI's":[105],"dbVar":[106],"EBI's":[108],"DGVa),":[109],"NIH":[111],"Genetic":[112],"Testing":[113],"Registry":[114],"centered":[119],"genetic":[122],"basis":[123],"disease,":[126],"potential":[127],"drugs,":[128],"their":[129],"targets":[130],"mechanisms":[133],"protein-ligand":[135],"binding.":[136],"Two":[137],"present":[140],"RNAseq":[143],"monkeys,":[146],"providing":[147],"wealth":[148],"our":[152],"closest":[153],"relatives":[154],"comparative":[156],"genomics":[157],"purposes.":[158],"Molecular":[162],"Biology":[163],"Collection,":[165],"available":[166,187],"at":[167],"http://www.oxfordjournals.org/nar/database/a/,":[168],"has":[169],"been":[170],"updated":[171],"currently":[173],"lists":[174],"1512":[175],"databases.":[177],"full":[179],"content":[180],"freely":[186],"website":[194],"(http://nar.oxfordjournals.org/).":[195]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":35},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
