{"id":"https://openalex.org/W2127012419","doi":"https://doi.org/10.1093/nar/gks1239","title":"KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters","display_name":"KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters","publication_year":2012,"publication_date":"2012-11-26","ids":{"openalex":"https://openalex.org/W2127012419","doi":"https://doi.org/10.1093/nar/gks1239","mag":"2127012419","pmid":"https://pubmed.ncbi.nlm.nih.gov/23193276"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1239","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1239","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D353/3703919/gks1239.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D353/3703919/gks1239.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031218359","display_name":"Akihiro Nakaya","orcid":"https://orcid.org/0000-0001-8308-6177"},"institutions":[{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Akihiro Nakaya","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, Japan","institution_ids":["https://openalex.org/I71395657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031153467","display_name":"Toshiaki Katayama","orcid":"https://orcid.org/0000-0003-2391-0384"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Toshiaki Katayama","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Research Organization of Information and Systems"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Research Organization of Information and Systems","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020657282","display_name":"Masumi Itoh","orcid":null},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masumi Itoh","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Hokkaido University"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Hokkaido University","institution_ids":["https://openalex.org/I205349734"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018658292","display_name":"Kazushi Hiranuka","orcid":null},"institutions":[{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I4210129581","display_name":"Kyoto University of Education","ror":"https://ror.org/03zhhr656","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210129581"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazushi Hiranuka","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Kyoto univ"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto univ","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210129581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039336067","display_name":"Shuichi Kawashima","orcid":"https://orcid.org/0000-0001-7883-3756"},"institutions":[{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shuichi Kawashima","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Research Organization of Information and Systems"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Research Organization of Information and Systems","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036198187","display_name":"Yuki Moriya","orcid":"https://orcid.org/0000-0001-8195-5893"},"institutions":[{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210129581","display_name":"Kyoto University of Education","ror":"https://ror.org/03zhhr656","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210129581"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuki Moriya","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Kyoto univ"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto univ","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210129581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062655330","display_name":"Shujiro Okuda","orcid":"https://orcid.org/0000-0002-7704-8104"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shujiro Okuda","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Ritsumeikan University"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Ritsumeikan University","institution_ids":["https://openalex.org/I135768898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110348304","display_name":"Michihiro Tanaka","orcid":"https://orcid.org/0000-0002-8208-0096"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Michihiro Tanaka","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Center for iPS Cell Research and Application"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Center for iPS Cell Research and Application","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042132185","display_name":"Toshiaki Tokimatsu","orcid":"https://orcid.org/0009-0006-0834-2461"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210129581","display_name":"Kyoto University of Education","ror":"https://ror.org/03zhhr656","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210129581"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Toshiaki Tokimatsu","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Kyoto univ"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto univ","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210129581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035394108","display_name":"Yoshihiro Yamanishi","orcid":"https://orcid.org/0000-0003-2279-8773"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihiro Yamanishi","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Institute for Advanced Study"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Institute for Advanced Study","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001540272","display_name":"Akiyasu C. Yoshizawa","orcid":"https://orcid.org/0000-0002-0870-5502"},"institutions":[{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I84776176","display_name":"Shimadzu (Japan)","ror":"https://ror.org/03k8der79","country_code":"JP","type":"company","lineage":["https://openalex.org/I84776176"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I922474255","display_name":"Tokushima University","ror":"https://ror.org/044vy1d05","country_code":"JP","type":"education","lineage":["https://openalex.org/I922474255"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akiyasu C. Yoshizawa","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Shimadzu Corporation","Tokushima University"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Shimadzu Corporation","institution_ids":["https://openalex.org/I84776176"]},{"raw_affiliation_string":"Tokushima University","institution_ids":["https://openalex.org/I922474255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058022821","display_name":"Minoru Kanehisa","orcid":"https://orcid.org/0000-0001-6123-540X"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]},{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]},{"id":"https://openalex.org/I135768898","display_name":"Ritsumeikan University","ror":"https://ror.org/0197nmd03","country_code":"JP","type":"education","lineage":["https://openalex.org/I135768898","https://openalex.org/I4390039241"]},{"id":"https://openalex.org/I205349734","display_name":"Hokkaido University","ror":"https://ror.org/02e16g702","country_code":"JP","type":"education","lineage":["https://openalex.org/I205349734"]},{"id":"https://openalex.org/I4210129581","display_name":"Kyoto University of Education","ror":"https://ror.org/03zhhr656","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210129581"]},{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Minoru Kanehisa","raw_affiliation_strings":["Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","Kyoto univ"],"affiliations":[{"raw_affiliation_string":"Center for Transdisciplinary Research, Niigata University, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8585, 2Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, 3Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, 4Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 5College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, 6Center for iPS Cell Research and Application, Kyoto University, 53 Kawahara-cho, Shogoin Yoshida, Sakyo-ku, Kyoto 606-8507, 7Division of System Cohort, Multi-scale Research Center for Medical Science, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, and 8Institute for Enzyme Research, the University of Tokushima, 3-18-15, Kuramoto-cho, Tokushima 770-8503, Japan","institution_ids":["https://openalex.org/I4210158934","https://openalex.org/I135768898","https://openalex.org/I71395657","https://openalex.org/I135598925","https://openalex.org/I205349734","https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto univ","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210129581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102872908","display_name":"Susumu Goto","orcid":"https://orcid.org/0000-0003-2989-8486"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210129581","display_name":"Kyoto University of Education","ror":"https://ror.org/03zhhr656","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210129581"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Susumu Goto","raw_affiliation_strings":["Kyoto univ"],"affiliations":[{"raw_affiliation_string":"Kyoto univ","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4210129581"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5031218359"],"corresponding_institution_ids":["https://openalex.org/I71395657"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.706,"has_fulltext":false,"cited_by_count":127,"citation_normalized_percentile":{"value":0.95892406,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D353","last_page":"D357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.9650319814682007},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7717215418815613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7291615009307861},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5392985939979553},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4778116047382355},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.47108495235443115},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.4359099566936493},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43561920523643494},{"id":"https://openalex.org/keywords/archaea","display_name":"Archaea","score":0.42019200325012207},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32260894775390625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1893831491470337},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.16866469383239746}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.9650319814682007},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7717215418815613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7291615009307861},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5392985939979553},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4778116047382355},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.47108495235443115},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.4359099566936493},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43561920523643494},{"id":"https://openalex.org/C550995028","wikidata":"https://www.wikidata.org/wiki/Q10872","display_name":"Archaea","level":3,"score":0.42019200325012207},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32260894775390625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1893831491470337},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.16866469383239746},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gks1239","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1239","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D353/3703919/gks1239.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23193276","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23193276","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:irdb.nii.ac.jp:01221:0000135232","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/174107","pdf_url":null,"source":{"id":"https://openalex.org/S7407056385","display_name":"Institutional Repositories DataBase (IRDB)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184597095","host_organization_name":"National Institute of Informatics","host_organization_lineage":["https://openalex.org/I184597095"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3531156","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531156","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1239","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1239","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D353/3703919/gks1239.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127012419.pdf","grobid_xml":"https://content.openalex.org/works/W2127012419.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W1977027195","https://openalex.org/W1990453950","https://openalex.org/W1998767819","https://openalex.org/W2048448217","https://openalex.org/W2057885377","https://openalex.org/W2082202339","https://openalex.org/W2087064593","https://openalex.org/W2097485877","https://openalex.org/W2112884978","https://openalex.org/W2117280851","https://openalex.org/W2120987877","https://openalex.org/W2122718339","https://openalex.org/W2130956021","https://openalex.org/W2131724426","https://openalex.org/W2133579817","https://openalex.org/W2138578706","https://openalex.org/W2141852440","https://openalex.org/W2148512362","https://openalex.org/W2155606054","https://openalex.org/W2160794724","https://openalex.org/W2171437346","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2029811702","https://openalex.org/W2995680756","https://openalex.org/W4221094432","https://openalex.org/W2340204314","https://openalex.org/W2481209426","https://openalex.org/W4313598112","https://openalex.org/W2952464362","https://openalex.org/W1669459870","https://openalex.org/W3128872455","https://openalex.org/W2127106003"],"abstract_inverted_index":{"The":[0,34,63,182],"identification":[1],"of":[2,9,30,37,114,118,122,127,132,155,164,196],"orthologous":[3],"genes":[4,51,78,156],"in":[5,17,52,79,169],"an":[6,193],"increasing":[7],"number":[8,131],"fully":[10],"sequenced":[11],"genomes":[12,55,117],"is":[13,91,134,144],"a":[14,27,119],"challenging":[15],"issue":[16],"recent":[18],"genome":[19],"science.":[20],"Here":[21],"we":[22],"present":[23],"KEGG":[24,38,104,148,170,183],"OC":[25,39,105,184,189],"(http://www.genome.jp/tools/oc/),":[26],"novel":[28],"database":[29,149],"ortholog":[31],"clusters":[32],"(OCs).":[33],"current":[35],"version":[36],"contains":[40],"1":[41],"176":[42],"030":[43],"OCs,":[44,96],"obtained":[45],"by":[46,67,150],"clustering":[47,71],"8":[48],"357":[49],"175":[50],"2112":[53],"complete":[54,81,116],"(153":[56],"eukaryotes,":[57],"1830":[58],"bacteria":[59],"and":[60,129,141,157,180],"129":[61],"archaea).":[62],"OCs":[64,165,197],"were":[65],"constructed":[66],"applying":[68],"the":[69,102,107,130,135,138,147,152],"quasi-clique-based":[70],"method":[72],"to":[73,94,99,161],"all":[74,80,115],"possible":[75],"protein":[76],"coding":[77],"genomes,":[82],"based":[83],"on":[84],"their":[85],"amino":[86],"acid":[87],"sequence":[88],"similarities.":[89],"It":[90,112,143],"computationally":[92],"efficient":[93],"calculate":[95],"which":[97,159],"enables":[98],"regularly":[100],"update":[101],"contents.":[103],"has":[106],"following":[108],"two":[109],"features:":[110],"(i)":[111],"consists":[113],"wide":[120],"variety":[121],"organisms":[123,133],"from":[124],"three":[125],"domains":[126],"life,":[128],"largest":[136],"among":[137],"existing":[139],"databases;":[140],"(ii)":[142],"compatible":[145],"with":[146,166],"sharing":[151],"same":[153],"sets":[154],"identifiers,":[158],"leads":[160],"seamless":[162],"integration":[163],"useful":[167],"components":[168],"such":[171],"as":[172],"biological":[173],"pathways,":[174],"pathway":[175],"modules,":[176],"functional":[177],"hierarchy,":[178],"diseases":[179],"drugs.":[181],"resources":[185],"are":[186],"accessible":[187],"via":[188],"Viewer":[190],"that":[191],"provides":[192],"interactive":[194],"visualization":[195],"at":[198],"different":[199],"taxonomic":[200],"levels.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":9}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
