{"id":"https://openalex.org/W2166617377","doi":"https://doi.org/10.1093/nar/gks1215","title":"INTERFEROME v2.0: an updated database of annotated interferon-regulated genes","display_name":"INTERFEROME v2.0: an updated database of annotated interferon-regulated genes","publication_year":2012,"publication_date":"2012-11-29","ids":{"openalex":"https://openalex.org/W2166617377","doi":"https://doi.org/10.1093/nar/gks1215","mag":"2166617377","pmid":"https://pubmed.ncbi.nlm.nih.gov/23203888"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1215","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1215","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1040/3686825/gks1215.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1040/3686825/gks1215.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010848216","display_name":"Irina Rusinova","orcid":null},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Irina Rusinova","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, Monash University, Clayton, Victoria, Australia","Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, Monash University, Clayton, Victoria, Australia","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004051536","display_name":"Samuel C. Forster","orcid":"https://orcid.org/0000-0003-4144-2537"},"institutions":[{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Sam Forster","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103353329","display_name":"Simon Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Simon Yu","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103559059","display_name":"Anitha Kannan","orcid":"https://orcid.org/0000-0003-3028-4959"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Anitha Kannan","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104652945","display_name":"Marion Mass\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Marion Masse","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025767780","display_name":"Helen Cumming","orcid":null},"institutions":[{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Helen Cumming","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108801053","display_name":"Ross Chapman","orcid":null},"institutions":[{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","FR"],"is_corresponding":false,"raw_author_name":"Ross Chapman","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035018866","display_name":"Paul J. Hertzog","orcid":"https://orcid.org/0000-0002-1373-8472"},"institutions":[{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU","FR"],"is_corresponding":true,"raw_author_name":"Paul J. Hertzog","raw_affiliation_strings":["Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France"],"affiliations":[{"raw_affiliation_string":"Centre for Innate Immunity and Infectious Diseases, Monash Institute of Medical Research, 2ARC Centre of Excellence for Structural and Functional Microbial Genomics, 3Monash e-Research, Monash University, Clayton, Victoria, Australia and 4Universite Paris Descartes, Paris, France","institution_ids":["https://openalex.org/I60733029","https://openalex.org/I56590836","https://openalex.org/I204730241"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5035018866"],"corresponding_institution_ids":["https://openalex.org/I204730241","https://openalex.org/I56590836","https://openalex.org/I60733029"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.6002,"has_fulltext":true,"cited_by_count":913,"citation_normalized_percentile":{"value":0.9892667,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D1040","last_page":"D1046"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11503","display_name":"Cytokine Signaling Pathways and Interactions","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10371","display_name":"Immune Response and Inflammation","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7652678489685059},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6421439051628113},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6315242052078247},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6094778776168823},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5391234755516052},{"id":"https://openalex.org/keywords/interferon","display_name":"Interferon","score":0.5109516978263855},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4600602984428406},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33351635932922363},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2956676483154297},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22783789038658142},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.15146806836128235}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7652678489685059},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6421439051628113},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6315242052078247},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6094778776168823},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5391234755516052},{"id":"https://openalex.org/C2776178377","wikidata":"https://www.wikidata.org/wiki/Q188269","display_name":"Interferon","level":2,"score":0.5109516978263855},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4600602984428406},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33351635932922363},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2956676483154297},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22783789038658142},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.15146806836128235}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gks1215","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1215","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1040/3686825/gks1215.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23203888","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23203888","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2536484","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3531205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:monash.edu:Publications/26fd6ab8-e0e4-492f-99c8-a2d062efb1c8","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pubmedcentral.nih.gov:3531205","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531205","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/272022","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/272022","pdf_url":"http://hdl.handle.net/11343/272022","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:monash.edu:publications/26fd6ab8-e0e4-492f-99c8-a2d062efb1c8","is_oa":true,"landing_page_url":"https://research.monash.edu/en/publications/26fd6ab8-e0e4-492f-99c8-a2d062efb1c8","pdf_url":"http://nar.oxfordjournals.org/content/41/D1/D1040.full.pdf","source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rusinova, I, Forster, S, Yu, S X, Kannan, A, Masse, M, Cumming, H E, Chapman, R & Hertzog, P J 2013, 'Interferome v2.0: an updated database of annotated interferon-regulated genes', Nucleic Acids Research, vol. 41, no. D1, pp. D1040-D1046. https://doi.org/10.1093/nar/gks1215","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1215","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1215","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1040/3686825/gks1215.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320312168","display_name":"Australian National Data Service","ror":"https://ror.org/038sjwq14"},{"id":"https://openalex.org/F4320322858","display_name":"State Government of Victoria","ror":"https://ror.org/02xvc5r05"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166617377.pdf","grobid_xml":"https://content.openalex.org/works/W2166617377.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W5609089","https://openalex.org/W1187022970","https://openalex.org/W1966535852","https://openalex.org/W1968134447","https://openalex.org/W1973454407","https://openalex.org/W1974652539","https://openalex.org/W1975619062","https://openalex.org/W2002220979","https://openalex.org/W2004829503","https://openalex.org/W2013444425","https://openalex.org/W2020173029","https://openalex.org/W2028689735","https://openalex.org/W2031423498","https://openalex.org/W2042433863","https://openalex.org/W2043963341","https://openalex.org/W2048535421","https://openalex.org/W2059355181","https://openalex.org/W2060926084","https://openalex.org/W2067181405","https://openalex.org/W2075413744","https://openalex.org/W2075715794","https://openalex.org/W2078844752","https://openalex.org/W2085237060","https://openalex.org/W2086414517","https://openalex.org/W2089228242","https://openalex.org/W2091018161","https://openalex.org/W2103017472","https://openalex.org/W2108477457","https://openalex.org/W2109108939","https://openalex.org/W2109543073","https://openalex.org/W2109972881","https://openalex.org/W2116811581","https://openalex.org/W2120865735","https://openalex.org/W2132309323","https://openalex.org/W2141407136","https://openalex.org/W2142415307","https://openalex.org/W2144078346","https://openalex.org/W2160042082","https://openalex.org/W2170989872","https://openalex.org/W3216988635","https://openalex.org/W6661774415","https://openalex.org/W6680991062","https://openalex.org/W6805175973"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2095118173","https://openalex.org/W2382021449","https://openalex.org/W2104269053","https://openalex.org/W2106424170","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2768810474","https://openalex.org/W4206575749"],"abstract_inverted_index":{"Interferome":[0,12,142,178],"v2.0":[1,78],"(http://interferome.its.monash.edu.au/interferome/)":[2],"is":[3,100],"an":[4,7],"update":[5],"of":[6,10,75,88,106,134,162,176,186,189,194],"earlier":[8],"version":[9,180],"the":[11,16,85,104,114,160,177,184,192],"DB":[13],"published":[14],"in":[15,67,77,116,141,149,168,191],"2009":[17],"NAR":[18],"database":[19,115],"edition.":[20],"Vastly":[21],"improved":[22],"computational":[23],"infrastructure":[24],"now":[25],"enables":[26],"more":[27,34],"complex":[28],"and":[29,32,41,60,63,94,96,172],"faster":[30],"queries,":[31],"supports":[33],"data":[35,52,145],"sets":[36],"from":[37],"types":[38],"I,":[39],"II":[40],"III":[42],"interferon":[43],"(IFN)-treated":[44],"cells,":[45],"mice":[46],"or":[47,130,144],"humans.":[48],"Quantitative,":[49],"MIAME":[50],"compliant":[51],"are":[53,70],"collected,":[54],"subjected":[55],"to":[56,103,112,164,179],"thorough,":[57],"standardized,":[58],"quantitative":[59],"statistical":[61],"analyses":[62],"then":[64],"significant":[65],"changes":[66],"gene":[68,124,187],"expression":[69,132],"uploaded.":[71],"Comprehensive":[72],"manual":[73],"collection":[74],"metadata":[76],"allows":[79],"flexible,":[80],"detailed":[81],"search":[82,113],"capacity":[83],"including":[84],"parameters:":[86],"range":[87],"-fold":[89],"change,":[90],"IFN":[91,163],"type,":[92],"concentration":[93],"time,":[95],"cell/tissue":[97],"type.":[98],"There":[99],"no":[101],"limit":[102],"number":[105],"genes":[107,136],"that":[108],"can":[109,138,146],"be":[110,139,147],"used":[111],"a":[117],"single":[118],"query.":[119],"Secondary":[120],"analysis":[121,157],"such":[122],"as":[123],"ontology,":[125],"regulatory":[126],"factors,":[127],"chromosomal":[128],"location":[129],"tissue":[131],"plots":[133],"IFN-regulated":[135],"(IRGs)":[137],"performed":[140],"v2.0,":[143],"downloaded":[148],"convenient":[150],"text":[151],"formats":[152],"compatible":[153],"with":[154],"common":[155],"secondary":[156],"programs.":[158],"Given":[159],"importance":[161,190],"innate":[165],"immune":[166],"responses":[167],"infectious,":[169],"inflammatory":[170],"diseases":[171],"cancer,":[173],"this":[174],"upgrade":[175],"2.0":[181],"will":[182],"facilitate":[183],"identification":[185],"signatures":[188],"pathogenesis":[193],"these":[195],"diseases.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":22},{"year":2025,"cited_by_count":69},{"year":2024,"cited_by_count":89},{"year":2023,"cited_by_count":69},{"year":2022,"cited_by_count":86},{"year":2021,"cited_by_count":134},{"year":2020,"cited_by_count":108},{"year":2019,"cited_by_count":81},{"year":2018,"cited_by_count":66},{"year":2017,"cited_by_count":63},{"year":2016,"cited_by_count":43},{"year":2015,"cited_by_count":43},{"year":2014,"cited_by_count":30},{"year":2013,"cited_by_count":10}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
