{"id":"https://openalex.org/W2121365413","doi":"https://doi.org/10.1093/nar/gks1201","title":"RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more","display_name":"RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more","publication_year":2012,"publication_date":"2012-11-29","ids":{"openalex":"https://openalex.org/W2121365413","doi":"https://doi.org/10.1093/nar/gks1201","mag":"2121365413","pmid":"https://pubmed.ncbi.nlm.nih.gov/23203884"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1201","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1201","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D203/18788690/gks1201.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D203/18788690/gks1201.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091338305","display_name":"Heladia Salgado","orcid":"https://orcid.org/0000-0002-3166-5801"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Heladia Salgado","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012485982","display_name":"Mart\u00edn Peralta-Gil","orcid":"https://orcid.org/0000-0002-1261-6633"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Martin Peralta-Gil","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033098879","display_name":"Socorro Gama\u2010Castro","orcid":"https://orcid.org/0000-0001-7708-5143"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Socorro Gama-Castro","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026565466","display_name":"Alberto Santos-Zavaleta","orcid":"https://orcid.org/0000-0002-2178-4006"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alberto Santos-Zavaleta","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021025671","display_name":"Luis Mu\u00f1iz-Rascado","orcid":"https://orcid.org/0000-0003-2941-2482"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Luis Mu\u00f1iz-Rascado","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020218652","display_name":"Jair Santiago Garc\u00eda-Sotelo","orcid":"https://orcid.org/0000-0002-9462-2737"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Jair S. Garc\u00eda-Sotelo","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109769947","display_name":"Verena Weiss","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Verena Weiss","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020449468","display_name":"Hilda Solano-Lira","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Hilda Solano-Lira","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083901001","display_name":"Irma Mart\u00ednez\u2010Flores","orcid":"https://orcid.org/0000-0001-9350-8978"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Irma Mart\u00ednez-Flores","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060491883","display_name":"Alejandra Medina-Rivera","orcid":"https://orcid.org/0000-0002-7912-2718"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alejandra Medina-Rivera","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016615243","display_name":"Gerardo Salgado-Osorio","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Gerardo Salgado-Osorio","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048400945","display_name":"Shirley Alquicira-Hern\u00e1ndez","orcid":"https://orcid.org/0000-0002-4709-2008"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Shirley Alquicira-Hern\u00e1ndez","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055561790","display_name":"Kevin Alquicira\u2010Hern\u00e1ndez","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Kevin Alquicira-Hern\u00e1ndez","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110712788","display_name":"Alejandra L\u00f3pez-Fuentes","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alejandra L\u00f3pez-Fuentes","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022141610","display_name":"Liliana Porr\u00f3n-Sotelo","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Liliana Porr\u00f3n-Sotelo","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100885807","display_name":"Araceli M. Huerta","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Araceli M. Huerta","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030231487","display_name":"C\u00e9sar Bonavides-Mart\u00ednez","orcid":"https://orcid.org/0000-0003-4966-138X"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"C\u00e9sar Bonavides-Mart\u00ednez","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019583077","display_name":"Yalbi Itzel Balderas-Mart\u00ednez","orcid":"https://orcid.org/0000-0001-6400-0526"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Yalbi I. Balderas-Mart\u00ednez","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059654847","display_name":"Lucia Pannier","orcid":"https://orcid.org/0000-0003-4160-9923"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Lucia Pannier","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078822878","display_name":"Maricela Olvera","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Maricela Olvera","raw_affiliation_strings":["Departamento de Ingenier a Celular y Biocata lisis, Instituto de Biotecnolog a, Universidad Nacional Auto noma de Me xico, A.P. 510-3, Cuernavaca, Morelos 62100,","Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier a Celular y Biocata lisis, Instituto de Biotecnolog a, Universidad Nacional Auto noma de Me xico, A.P. 510-3, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003522500","display_name":"Aurora Labastida","orcid":"https://orcid.org/0000-0003-2099-7920"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Aurora Labastida","raw_affiliation_strings":["Departamento de Ingenier a Celular y Biocata lisis, Instituto de Biotecnolog a, Universidad Nacional Auto noma de Me xico, A.P. 510-3, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier a Celular y Biocata lisis, Instituto de Biotecnolog a, Universidad Nacional Auto noma de Me xico, A.P. 510-3, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074818120","display_name":"Ver\u00f3nica Jim\u00e9nez\u2010Jacinto","orcid":"https://orcid.org/0000-0001-6742-1537"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Ver\u00f3nica Jim\u00e9nez-Jacinto","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044033074","display_name":"Leticia Vega\u2010Alvarado","orcid":"https://orcid.org/0000-0002-1200-1137"},"institutions":[{"id":"https://openalex.org/I4210099687","display_name":"Ministerio de Desarrollo Agropecuario","ror":"https://ror.org/014rvs568","country_code":"PA","type":"government","lineage":["https://openalex.org/I4210099687"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX","PA"],"is_corresponding":false,"raw_author_name":"Leticia Vega-Alvarado","raw_affiliation_strings":["Grupo de Visio n Artificial y Bioinforma tica, Centro de Ciencias Aplicadas y Desarrollo Tecnolo gico, Universidad Nacional Auto noma de Me xico, D.F., Me xico 04510","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Grupo de Visio n Artificial y Bioinforma tica, Centro de Ciencias Aplicadas y Desarrollo Tecnolo gico, Universidad Nacional Auto noma de Me xico, D.F., Me xico 04510","institution_ids":["https://openalex.org/I4210099687"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070252158","display_name":"V\u00edctor Del Moral-Ch\u00e1vez","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Victor del Moral-Ch\u00e1vez","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073104989","display_name":"Alfredo Jos\u00e9 Hern\u00e1ndez-\u00c1lvarez","orcid":"https://orcid.org/0009-0006-1025-9931"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alfredo Hern\u00e1ndez-Alvarez","raw_affiliation_strings":["Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039196751","display_name":"Enrique Morett","orcid":"https://orcid.org/0000-0001-5723-0032"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Enrique Morett","raw_affiliation_strings":["Departamento de Ingenier a Celular y Biocata lisis, Instituto de Biotecnolog a, Universidad Nacional Auto noma de Me xico, A.P. 510-3, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier a Celular y Biocata lisis, Instituto de Biotecnolog a, Universidad Nacional Auto noma de Me xico, A.P. 510-3, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079232768","display_name":"Julio Collado\u2010Vides","orcid":"https://orcid.org/0000-0001-8780-7664"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Julio Collado-Vides","raw_affiliation_strings":["Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Geno mica Computacional, Centro de Ciencias Geno micas, Universidad Nacional Auto noma de Me xico, A.P. 565-A, Cuernavaca, Morelos 62100,","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Universidad Nacional Aut\u00f3noma de M\u00e9xico, Mexico City, Mexico","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":27,"corresponding_author_ids":["https://openalex.org/A5091338305"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":27.2941,"has_fulltext":true,"cited_by_count":449,"citation_normalized_percentile":{"value":0.99821244,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D203","last_page":"D213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7075977325439453},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6026488542556763},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5087547898292542},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49726584553718567},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.48243436217308044},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.41586920619010925},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3145899176597595},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30530014634132385},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23022523522377014},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1611224114894867}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7075977325439453},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6026488542556763},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5087547898292542},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49726584553718567},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.48243436217308044},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41586920619010925},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3145899176597595},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30530014634132385},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23022523522377014},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1611224114894867},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012097","descriptor_name":"Repressor Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012097","descriptor_name":"Repressor Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012097","descriptor_name":"Repressor Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048168","descriptor_name":"Escherichia coli K12","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gks1201","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1201","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D203/18788690/gks1201.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23203884","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23203884","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2536480","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3531196","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3531196","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531196","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1201","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1201","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D203/18788690/gks1201.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2009364751","display_name":null,"funder_award_id":"GM077678","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3144428136","display_name":null,"funder_award_id":"GM07767","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5077415591","display_name":null,"funder_award_id":"GM077678","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7602723344","display_name":null,"funder_award_id":"GM07767","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121365413.pdf","grobid_xml":"https://content.openalex.org/works/W2121365413.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W192431290","https://openalex.org/W1490553060","https://openalex.org/W1582854101","https://openalex.org/W1897119929","https://openalex.org/W1929735109","https://openalex.org/W1940645698","https://openalex.org/W1976486696","https://openalex.org/W1980589303","https://openalex.org/W1981509058","https://openalex.org/W1991474991","https://openalex.org/W1997292872","https://openalex.org/W2008687368","https://openalex.org/W2023401038","https://openalex.org/W2026789880","https://openalex.org/W2032313001","https://openalex.org/W2054331129","https://openalex.org/W2055182487","https://openalex.org/W2060539823","https://openalex.org/W2062896692","https://openalex.org/W2080413755","https://openalex.org/W2081283268","https://openalex.org/W2081565709","https://openalex.org/W2085360026","https://openalex.org/W2088990426","https://openalex.org/W2096192437","https://openalex.org/W2096959582","https://openalex.org/W2098889266","https://openalex.org/W2099373438","https://openalex.org/W2101347991","https://openalex.org/W2105222452","https://openalex.org/W2108649763","https://openalex.org/W2115378879","https://openalex.org/W2115577355","https://openalex.org/W2116373379","https://openalex.org/W2117357746","https://openalex.org/W2139915240","https://openalex.org/W2141241032","https://openalex.org/W2145477956","https://openalex.org/W2146693523","https://openalex.org/W2150688068","https://openalex.org/W2158057347","https://openalex.org/W2161666385","https://openalex.org/W2161701107","https://openalex.org/W2171111703","https://openalex.org/W2172141254","https://openalex.org/W2915607458","https://openalex.org/W4233997115"],"related_works":["https://openalex.org/W2944823289","https://openalex.org/W3037018281","https://openalex.org/W2972592048","https://openalex.org/W2358319515","https://openalex.org/W4321854979","https://openalex.org/W2003209439","https://openalex.org/W2497626292","https://openalex.org/W4312214821","https://openalex.org/W4361862506","https://openalex.org/W2390344072"],"abstract_inverted_index":{"This":[0],"article":[1],"summarizes":[2],"our":[3,35,58,91,134],"progress":[4],"with":[5,142],"RegulonDB":[6,176],"(http://regulondb.ccg.unam.mx/)":[7],"during":[8],"the":[9,17,20,40,45,55,72,102,155,165,191],"past":[10],"2":[11],"years.":[12],"We":[13,30,70],"have":[14,31,51],"kept":[15],"up-to-date":[16],"knowledge":[18,83,160,186],"from":[19,190],"published":[21],"literature":[22],"regarding":[23],"transcriptional":[24],"regulation":[25,189],"in":[26],"Escherichia":[27],"coli":[28],"K-12.":[29],"maintained":[32],"and":[33,42,49,151],"expanded":[34,71],"curation":[36],"efforts":[37],"to":[38,76],"improve":[39],"breadth":[41],"quality":[43,56,75,103],"of":[44,57,67,74,79,93,104,117,127,133,157,168,193],"encoded":[46],"experimental":[47,135],"knowledge,":[48],"we":[50,97,119],"implemented":[52],"criteria":[53],"for":[54,82,100,184],"computational":[59],"predictions.":[60],"Regulatory":[61],"phrases":[62],"now":[63],"provide":[64],"high-level":[65],"descriptions":[66],"regulatory":[68,169],"regions.":[69],"assignment":[73],"various":[77],"sources":[78,109,192],"evidence,":[80],"particularly":[81],"generated":[84],"through":[85],"high-throughput":[86],"(HT)":[87],"technology.":[88],"Based":[89],"on":[90,164,187],"analysis":[92],"most":[94],"relevant":[95],"methods,":[96],"defined":[98],"rules":[99],"determining":[101],"evidence":[105],"when":[106],"multiple":[107],"independent":[108],"support":[110],"an":[111],"entry.":[112],"With":[113],"this":[114],"latest":[115],"release":[116],"RegulonDB,":[118],"present":[120],"a":[121,131,180],"new":[122],"highly":[123],"reliable":[124],"larger":[125],"collection":[126],"transcription":[128],"start":[129],"sites,":[130],"result":[132],"HT":[136],"genome-wide":[137],"efforts.":[138],"These":[139],"improvements,":[140],"together":[141],"several":[143],"novel":[144],"enhancements":[145],"(the":[146],"tracks":[147],"display,":[148],"uploading":[149],"format":[150],"curational":[152],"guidelines),":[153],"address":[154],"challenges":[156],"incorporating":[158],"HT-generated":[159],"into":[161],"RegulonDB.":[162],"Information":[163],"evolutionary":[166],"conservation":[167],"elements":[170],"is":[171,179],"also":[172],"available":[173],"now.":[174],"Altogether,":[175],"version":[177],"8.0":[178],"much":[181],"better":[182],"home":[183],"integrating":[185],"gene":[188],"information":[194],"currently":[195],"available.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":35},{"year":2017,"cited_by_count":51},{"year":2016,"cited_by_count":76},{"year":2015,"cited_by_count":95},{"year":2014,"cited_by_count":70},{"year":2013,"cited_by_count":37},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
