{"id":"https://openalex.org/W2146734921","doi":"https://doi.org/10.1093/nar/gks1172","title":"ENCODE Data in the UCSC Genome Browser: year 5 update","display_name":"ENCODE Data in the UCSC Genome Browser: year 5 update","publication_year":2012,"publication_date":"2012-11-26","ids":{"openalex":"https://openalex.org/W2146734921","doi":"https://doi.org/10.1093/nar/gks1172","mag":"2146734921","pmid":"https://pubmed.ncbi.nlm.nih.gov/23193274"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1172","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1172","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D56/3671170/gks1172.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D56/3671170/gks1172.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044656439","display_name":"Kate R. Rosenbloom","orcid":"https://orcid.org/0000-0001-8799-4826"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kate R. Rosenbloom","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. kate@soe.ucsc.edu","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. kate@soe.ucsc.edu","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041151354","display_name":"Cricket A. Sloan","orcid":"https://orcid.org/0000-0002-0693-6999"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cricket A. Sloan","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013449579","display_name":"Venkat S. Malladi","orcid":"https://orcid.org/0000-0002-0144-0564"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Venkat S. Malladi","raw_affiliation_strings":["Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305, USA,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305, USA,","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101980603","display_name":"Timothy R. Dreszer","orcid":"https://orcid.org/0000-0002-7328-1283"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy R. Dreszer","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041383424","display_name":"Katrina Learned","orcid":"https://orcid.org/0000-0003-3112-7525"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katrina Learned","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087249560","display_name":"Vanessa M. Kirkup","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vanessa M. Kirkup","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103331277","display_name":"Matthew C. Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew C. Wong","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064385256","display_name":"Morgan Maddren","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Morgan Maddren","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022121743","display_name":"Ruihua Fang","orcid":"https://orcid.org/0000-0001-5102-7156"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruihua Fang","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003938452","display_name":"Steven G. Heitner","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven G. Heitner","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085049971","display_name":"Brian T. Lee","orcid":"https://orcid.org/0000-0001-6382-9738"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian T. Lee","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112697905","display_name":"Galt P Barber","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Galt P. Barber","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085724154","display_name":"Rachel Harte","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel A. Harte","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054009720","display_name":"Mark Diekhans","orcid":"https://orcid.org/0000-0002-0430-0989"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Diekhans","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004983694","display_name":"Jeffrey C. Long","orcid":"https://orcid.org/0000-0002-0435-1209"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey C. Long","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033670082","display_name":"Steven P. Wilder","orcid":"https://orcid.org/0000-0001-8049-2559"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Steven P. Wilder","raw_affiliation_strings":["Vertebrate Genomics Group, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK and","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Vertebrate Genomics Group, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK and","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034427205","display_name":"Ann S. Zweig","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ann S. Zweig","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076917634","display_name":"Donna Karolchik","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donna Karolchik","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072909873","display_name":"Robert M. Kuhn","orcid":"https://orcid.org/0000-0001-8103-7793"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert M. Kuhn","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090849321","display_name":"David Haussler","orcid":"https://orcid.org/0000-0003-1533-4575"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Haussler","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","Howard Hughes Medical Institute, UCSC, Santa Cruz, CA 95064, USA","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, UCSC, Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I1344073410"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006195366","display_name":"W. James Kent","orcid":"https://orcid.org/0000-0002-2564-9303"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. James Kent","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","University of California, Santa Cruz, Santa Cruz, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa Cruz, Santa Cruz, United States","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":21,"corresponding_author_ids":["https://openalex.org/A5044656439"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":34.633,"has_fulltext":true,"cited_by_count":805,"citation_normalized_percentile":{"value":0.99887673,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D56","last_page":"D63"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.9570431113243103},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.7589519619941711},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7429258227348328},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7395508289337158},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.6793160438537598},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.5908485651016235},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.5538880228996277},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.4698537588119507},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.422590970993042},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4010911285877228},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.38932615518569946},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3428022861480713},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22314122319221497},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.19725683331489563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19076481461524963}],"concepts":[{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.9570431113243103},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.7589519619941711},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7429258227348328},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7395508289337158},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.6793160438537598},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.5908485651016235},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5538880228996277},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.4698537588119507},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.422590970993042},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4010911285877228},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.38932615518569946},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3428022861480713},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22314122319221497},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.19725683331489563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19076481461524963},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gks1172","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1172","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D56/3671170/gks1172.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23193274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23193274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2590258","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531152","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1172","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1172","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D56/3671170/gks1172.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.49000000953674316,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146734921.pdf","grobid_xml":"https://content.openalex.org/works/W2146734921.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1544691147","https://openalex.org/W1996212302","https://openalex.org/W2009935171","https://openalex.org/W2018363492","https://openalex.org/W2031057223","https://openalex.org/W2039176012","https://openalex.org/W2041993671","https://openalex.org/W2075016035","https://openalex.org/W2079671119","https://openalex.org/W2081942683","https://openalex.org/W2094678200","https://openalex.org/W2096465161","https://openalex.org/W2102904139","https://openalex.org/W2118608526","https://openalex.org/W2124514674","https://openalex.org/W2127143129","https://openalex.org/W2128016314","https://openalex.org/W2157750191","https://openalex.org/W2158272128","https://openalex.org/W2160379721","https://openalex.org/W2166810745","https://openalex.org/W2167827709","https://openalex.org/W2171808845","https://openalex.org/W2247766769","https://openalex.org/W2259938310","https://openalex.org/W3104066961","https://openalex.org/W4210347168","https://openalex.org/W4230875896"],"related_works":["https://openalex.org/W2158272128","https://openalex.org/W2139297998","https://openalex.org/W2462807523","https://openalex.org/W3109437984","https://openalex.org/W2274932919","https://openalex.org/W2804921183","https://openalex.org/W4387264054","https://openalex.org/W2160379721","https://openalex.org/W2152320398","https://openalex.org/W2009935171"],"abstract_inverted_index":{"The":[0,88,120],"Encyclopedia":[1],"of":[2,12,20,31,85,90,111],"DNA":[3],"Elements":[4],"(ENCODE),":[5],"http://encodeproject.org,":[6],"has":[7,49],"completed":[8],"its":[9,28],"fifth":[10],"year":[11,30],"scientific":[13],"collaboration":[14],"to":[15,79],"create":[16],"a":[17,59],"comprehensive":[18],"catalog":[19],"functional":[21],"elements":[22],"in":[23,33,41],"the":[24,34,38,44,64,77,83,86,99,129],"human":[25,46],"genome,":[26,66],"and":[27,107,113,126],"third":[29],"investigations":[32],"mouse":[35,65],"genome.":[36],"Since":[37],"last":[39],"report":[40],"this":[42,74,95],"journal,":[43],"ENCODE":[45,121,130],"data":[47,96,108,115,131],"repertoire":[48],"grown":[50],"by":[51,58],"898":[52],"new":[53,70],"experiments":[54,71],"(totaling":[55],"2886),":[56],"accompanied":[57],"major":[60],"integrative":[61],"analysis.":[62],"In":[63],"results":[67],"from":[68],"404":[69],"became":[72],"available":[73,97],"year,":[75],"increasing":[76],"total":[78],"583,":[80],"collected":[81],"during":[82],"course":[84],"project.":[87],"University":[89],"California,":[91],"Santa":[92],"Cruz,":[93],"makes":[94],"on":[98],"public":[100],"Genome":[101],"Browser":[102],"http://genome.ucsc.edu":[103],"for":[104],"visual":[105],"browsing":[106],"mining.":[109],"Download":[110],"raw":[112],"processed":[114],"files":[116],"are":[117],"all":[118],"supported.":[119],"portal":[122],"provides":[123],"specialized":[124],"tools":[125],"information":[127],"about":[128],"sets.":[132]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":44},{"year":2023,"cited_by_count":39},{"year":2022,"cited_by_count":39},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":51},{"year":2019,"cited_by_count":49},{"year":2018,"cited_by_count":68},{"year":2017,"cited_by_count":87},{"year":2016,"cited_by_count":93},{"year":2015,"cited_by_count":106},{"year":2014,"cited_by_count":94},{"year":2013,"cited_by_count":57},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-28T08:17:26.163206","created_date":"2025-10-10T00:00:00"}
