{"id":"https://openalex.org/W2163346964","doi":"https://doi.org/10.1093/nar/gks1153","title":"MIPS PlantsDB: a database framework for comparative plant genome research","display_name":"MIPS PlantsDB: a database framework for comparative plant genome research","publication_year":2012,"publication_date":"2012-11-29","ids":{"openalex":"https://openalex.org/W2163346964","doi":"https://doi.org/10.1093/nar/gks1153","mag":"2163346964","pmid":"https://pubmed.ncbi.nlm.nih.gov/23203886"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1153","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gks1153","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039331758","display_name":"Thomas Nu\u00dfbaumer","orcid":"https://orcid.org/0000-0003-4922-1966"},"institutions":[{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Nussbaumer","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich-German Research Center for Environmental Health, 85764 Neuherberg, Germany","Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich-German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063950256","display_name":"Mihaela Martis","orcid":"https://orcid.org/0000-0001-7509-2446"},"institutions":[{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mihaela M. Martis","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060971140","display_name":"Stephan K. Roessner","orcid":null},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan K. Roessner","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102902572","display_name":"Matthias Pfeifer","orcid":"https://orcid.org/0000-0002-2447-8784"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Pfeifer","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032672258","display_name":"Kai Christian Bader","orcid":null},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kai C. Bader","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101481228","display_name":"Sapna Sharma","orcid":"https://orcid.org/0000-0003-1039-8879"},"institutions":[{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sapna Sharma","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020355022","display_name":"Heidrun Gundlach","orcid":"https://orcid.org/0000-0002-6757-0943"},"institutions":[{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heidrun Gundlach","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086134082","display_name":"M. Spannagl","orcid":"https://orcid.org/0000-0003-0701-7035"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Manuel Spannagl","raw_affiliation_strings":["Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Munich Information Center for Protein Sequences/Institute of Bioinformatics and Systems Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health, 85764 Neuherberg, Germany","institution_ids":["https://openalex.org/I4210100097","https://openalex.org/I3018134672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5086134082"],"corresponding_institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210100097"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.8405,"has_fulltext":false,"cited_by_count":180,"citation_normalized_percentile":{"value":0.96111179,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D1144","last_page":"D1151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7982239723205566},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7487974166870117},{"id":"https://openalex.org/keywords/brachypodium","display_name":"Brachypodium","score":0.7412877082824707},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.6498216986656189},{"id":"https://openalex.org/keywords/brachypodium-distachyon","display_name":"Brachypodium distachyon","score":0.6376394033432007},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.6374002695083618},{"id":"https://openalex.org/keywords/triticeae","display_name":"Triticeae","score":0.6293337941169739},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5500461459159851},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5105360746383667},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40045052766799927},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2244594395160675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20727068185806274},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14218685030937195}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7982239723205566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7487974166870117},{"id":"https://openalex.org/C2777749068","wikidata":"https://www.wikidata.org/wiki/Q157770","display_name":"Brachypodium","level":4,"score":0.7412877082824707},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6498216986656189},{"id":"https://openalex.org/C2777911459","wikidata":"https://www.wikidata.org/wiki/Q2352209","display_name":"Brachypodium distachyon","level":4,"score":0.6376394033432007},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.6374002695083618},{"id":"https://openalex.org/C2778064478","wikidata":"https://www.wikidata.org/wiki/Q148694","display_name":"Triticeae","level":4,"score":0.6293337941169739},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5500461459159851},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5105360746383667},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40045052766799927},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2244594395160675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20727068185806274},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14218685030937195}],"mesh":[{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020071","descriptor_name":"Interspersed Repetitive Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020071","descriptor_name":"Interspersed Repetitive Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020071","descriptor_name":"Interspersed Repetitive Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gks1153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1153","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23203886","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23203886","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.811.708","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.811.708","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/f7/bf/gks1153.PMC3531202.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2590290","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531202","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:11721","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=11721","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res. 41, D1144-D1151 (2013)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1153","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1967024978","https://openalex.org/W1975445958","https://openalex.org/W1994300565","https://openalex.org/W1998336630","https://openalex.org/W2001671544","https://openalex.org/W2008856488","https://openalex.org/W2024290096","https://openalex.org/W2024309448","https://openalex.org/W2045443430","https://openalex.org/W2051402099","https://openalex.org/W2056871145","https://openalex.org/W2059864757","https://openalex.org/W2061616850","https://openalex.org/W2067086660","https://openalex.org/W2070387787","https://openalex.org/W2071501400","https://openalex.org/W2080693057","https://openalex.org/W2081730254","https://openalex.org/W2088015737","https://openalex.org/W2094923272","https://openalex.org/W2102399841","https://openalex.org/W2107915254","https://openalex.org/W2108739303","https://openalex.org/W2110582126","https://openalex.org/W2118140755","https://openalex.org/W2119574871","https://openalex.org/W2128784468","https://openalex.org/W2158804744","https://openalex.org/W2159549123","https://openalex.org/W2415360382","https://openalex.org/W3187176588","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1528877614","https://openalex.org/W2101318828","https://openalex.org/W2008563632","https://openalex.org/W2119574871","https://openalex.org/W2105369779","https://openalex.org/W1557460561","https://openalex.org/W2195679832","https://openalex.org/W1885041234","https://openalex.org/W2095609581","https://openalex.org/W2163346964"],"abstract_inverted_index":{"The":[0,183],"rapidly":[1],"increasing":[2],"amount":[3],"of":[4,170,208],"plant":[5,32,84,107,118],"genome":[6,85,119,161],"(sequence)":[7],"data":[8,46,101],"enables":[9],"powerful":[10],"comparative":[11,40,83,117,141],"analyses":[12],"and":[13,16,20,30,34,39,49,74,82,92,102,116,134,151,167,174,178,189],"integrative":[14,81,115],"approaches":[15],"also":[17],"requires":[18],"structured":[19],"comprehensive":[21],"information":[22,103],"resources.":[23],"Databases":[24],"are":[25,147,176,204],"needed":[26],"for":[27,80,105,114,125],"both":[28,35],"model":[29,181],"crop":[31],"organisms":[33],"intuitive":[36],"search/browse":[37],"views":[38],"genomics":[41,142],"tools":[42,143],"should":[43],"communicate":[44],"the":[45,97,165],"to":[47,99,149,197],"researchers":[48],"help":[50],"them":[51],"interpret":[52],"it.":[53],"MIPS":[54,184],"PlantsDB":[55,121],"(http://mips.helmholtz-muenchen.de/plant/genomes.jsp)":[56],"was":[57,93],"initially":[58],"described":[59],"in":[60,62],"NAR":[61],"2007":[63],"[Spannagl,M.,":[64],"Noubibou,O.,":[65],"Haase,D.,":[66],"Yang,L.,":[67],"Gundlach,H.,":[68],"Hindemitt,":[69],"T.,":[70],"Klee,K.,":[71],"Haberer,G.,":[72],"Schoof,H.":[73],"Mayer,K.F.":[75],"(2007)":[76],"MIPSPlantsDB-plant":[77],"database":[78,123],"resource":[79],"research.":[86,120],"Nucleic":[87],"Acids":[88],"Res.,":[89],"35,":[90],"D834-D840]":[91],"set":[94],"up":[95,137],"from":[96,159],"start":[98],"provide":[100],"resources":[104],"individual":[106],"species":[108,172],"as":[109,111,145,192,194],"well":[110,193],"a":[112],"framework":[113],"comprises":[122],"instances":[124],"tomato,":[126],"Medicago,":[127],"Arabidopsis,":[128],"Brachypodium,":[129],"Sorghum,":[130],"maize,":[131],"rice,":[132],"barley":[133],"wheat.":[135],"Building":[136],"on":[138],"that,":[139],"state-of-the-art":[140],"such":[144],"CrowsNest":[146],"integrated":[148],"visualize":[150],"investigate":[152],"syntenic":[153],"relationships":[154],"between":[155],"monocot":[156],"genomes.":[157],"Results":[158],"novel":[160],"analysis":[162],"strategies":[163],"targeting":[164],"complex":[166],"repetitive":[168],"genomes":[169],"triticeae":[171],"(wheat":[173],"barley)":[175],"provided":[177],"cross-linked":[179],"with":[180],"species.":[182],"Repeat":[185],"Element":[186],"Database":[187],"(mips-REdat)":[188],"Catalog":[190],"(mips-REcat)":[191],"tight":[195],"connections":[196],"other":[198],"databases,":[199],"e.g.":[200],"via":[201],"web":[202],"services,":[203],"further":[205],"important":[206],"components":[207],"PlantsDB.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":17},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":23},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":23},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":7}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
