{"id":"https://openalex.org/W2081250686","doi":"https://doi.org/10.1093/nar/gks1152","title":"DDBJ new system and service refactoring","display_name":"DDBJ new system and service refactoring","publication_year":2012,"publication_date":"2012-11-23","ids":{"openalex":"https://openalex.org/W2081250686","doi":"https://doi.org/10.1093/nar/gks1152","mag":"2081250686","pmid":"https://pubmed.ncbi.nlm.nih.gov/23180790"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1152","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1152","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D25/3650801/gks1152.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D25/3650801/gks1152.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019530544","display_name":"Osamu Ogasawara","orcid":"https://orcid.org/0000-0001-6001-3397"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Osamu Ogasawara","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan. oogasawa@nig.ac.jp","DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan. oogasawa@nig.ac.jp","institution_ids":["https://openalex.org/I113198587"]},{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079071332","display_name":"Jun Mashima","orcid":"https://orcid.org/0000-0003-4138-1893"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jun Mashima","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780"]},{"raw_affiliation_string":"1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048459843","display_name":"Yuichi Kodama","orcid":"https://orcid.org/0000-0001-7691-9812"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuichi Kodama","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780"]},{"raw_affiliation_string":"1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082257767","display_name":"Eli Kaminuma","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Eli Kaminuma","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780"]},{"raw_affiliation_string":"1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083746382","display_name":"Yasukazu Nakamura","orcid":"https://orcid.org/0000-0002-6782-5715"},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasukazu Nakamura","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780"]},{"raw_affiliation_string":"1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020740858","display_name":"Kousaku Okubo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kousaku Okubo","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780"]},{"raw_affiliation_string":"1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104355283","display_name":"Toshihisa Takagi","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Toshihisa Takagi","raw_affiliation_strings":["DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan"],"affiliations":[{"raw_affiliation_string":"DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780"]},{"raw_affiliation_string":"1DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and 2National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan","institution_ids":["https://openalex.org/I113198587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5019530544"],"corresponding_institution_ids":["https://openalex.org/I113198587"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.413,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.89101115,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"41","issue":"D1","first_page":"D25","last_page":"D29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6396797895431519},{"id":"https://openalex.org/keywords/data-bank","display_name":"Data bank","score":0.553888738155365},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5250946283340454},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45401257276535034},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.43525466322898865},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.42542946338653564},{"id":"https://openalex.org/keywords/nucleic-acid-sequence","display_name":"Nucleic acid sequence","score":0.4116396903991699},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36873841285705566},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3354567289352417},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3260999917984009},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3053349256515503},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22503885626792908},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14868038892745972},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12603741884231567}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6396797895431519},{"id":"https://openalex.org/C2779786304","wikidata":"https://www.wikidata.org/wiki/Q5227243","display_name":"Data bank","level":2,"score":0.553888738155365},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5250946283340454},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45401257276535034},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.43525466322898865},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.42542946338653564},{"id":"https://openalex.org/C84148353","wikidata":"https://www.wikidata.org/wiki/Q863908","display_name":"Nucleic acid sequence","level":3,"score":0.4116396903991699},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36873841285705566},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3354567289352417},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3260999917984009},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3053349256515503},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22503885626792908},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14868038892745972},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12603741884231567},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gks1152","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1152","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D25/3650801/gks1152.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23180790","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23180790","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2590255","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1152","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1152","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D25/3650801/gks1152.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G12401395","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G6267471473","display_name":null,"funder_award_id":"Grant-in-Aid","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7599130655","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7693551792","display_name":null,"funder_award_id":"(MEXT)","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8044579487","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2081250686.pdf","grobid_xml":"https://content.openalex.org/works/W2081250686.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1555915743","https://openalex.org/W1964550430","https://openalex.org/W1985666887","https://openalex.org/W2036288429","https://openalex.org/W2075610412","https://openalex.org/W2076213621","https://openalex.org/W2099964107","https://openalex.org/W2106882534","https://openalex.org/W2120141270","https://openalex.org/W2129687578","https://openalex.org/W2142678031","https://openalex.org/W2158714788","https://openalex.org/W2159793238","https://openalex.org/W2165446840","https://openalex.org/W2167307642","https://openalex.org/W2205716656","https://openalex.org/W4241422942","https://openalex.org/W6688200956"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W2138102289","https://openalex.org/W35800254","https://openalex.org/W1967424056","https://openalex.org/W1482729171","https://openalex.org/W868043274","https://openalex.org/W27170867","https://openalex.org/W1981014117","https://openalex.org/W151959011","https://openalex.org/W199139409"],"abstract_inverted_index":{"The":[0],"DNA":[1],"data":[2,63,117],"bank":[3],"of":[4,46,68,81,87,138,144,160,170],"Japan":[5],"(DDBJ,":[6],"http://www.ddbj.nig.ac.jp)":[7],"maintains":[8],"a":[9,130,168],"primary":[10],"nucleotide":[11,61],"sequence":[12,62,93,104],"database":[13,24],"and":[14,37,84,141,156],"provides":[15],"analytical":[16],"resources":[17],"for":[18,33],"biological":[19],"information":[20],"to":[21,154,180],"researchers.":[22],"This":[23],"content":[25],"is":[26],"exchanged":[27],"with":[28,113],"the":[29,38,44,47,57,66,92,114,161,171],"US":[30],"National":[31],"Center":[32],"Biotechnology":[34],"Information":[35],"(NCBI)":[36],"European":[39],"Bioinformatics":[40],"Institute":[41],"(EBI)":[42],"within":[43],"framework":[45],"International":[48],"Nucleotide":[49],"Sequence":[50],"Database":[51],"Collaboration":[52],"(INSDC).":[53],"Resources":[54],"provided":[55],"by":[56,129],"DDBJ":[58,162],"include":[59],"traditional":[60],"released":[64],"in":[65,91,119,187],"form":[67],"27":[69],"316":[70],"452":[71],"entries":[72],"or":[73],"16":[74],"876":[75],"791":[76],"557":[77],"base":[78],"pairs":[79],"(as":[80],"June":[82],"2012),":[83],"raw":[85],"reads":[86],"new":[88],"generation":[89],"sequencers":[90],"read":[94],"archive":[95],"(SRA).":[96],"A":[97],"Japanese":[98],"researcher":[99],"published":[100],"his":[101],"own":[102],"genome":[103],"via":[105],"DDBJ-SRA":[106],"on":[107],"31":[108],"July":[109],"2012.":[110],"To":[111],"cope":[112],"ongoing":[115],"genomic":[116],"deluge,":[118],"March":[120],"2012,":[121],"our":[122],"computer":[123],"previous":[124],"system":[125,133,188],"was":[126,151],"totally":[127],"replaced":[128],"commodity":[131],"cluster-based":[132],"that":[134],"boasts":[135],"122.5":[136],"TFlops":[137],"CPU":[139],"capacity":[140],"5":[142],"PB":[143],"storage":[145],"space.":[146],"During":[147],"this":[148],"upgrade,":[149],"it":[150],"considered":[152],"crucial":[153],"replace":[155],"refactor":[157],"substantial":[158],"portions":[159],"software":[163],"systems":[164],"as":[165],"well.":[166],"As":[167],"result":[169],"replacement":[172],"process,":[173],"which":[174],"took":[175],"more":[176],"than":[177],"2":[178],"years":[179],"perform,":[181],"we":[182],"have":[183],"achieved":[184],"significant":[185],"improvements":[186],"performance.":[189]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}