{"id":"https://openalex.org/W2052685738","doi":"https://doi.org/10.1093/nar/gks1147","title":"InnateDB: systems biology of innate immunity and beyond\u2014recent updates and continuing curation","display_name":"InnateDB: systems biology of innate immunity and beyond\u2014recent updates and continuing curation","publication_year":2012,"publication_date":"2012-11-23","ids":{"openalex":"https://openalex.org/W2052685738","doi":"https://doi.org/10.1093/nar/gks1147","mag":"2052685738","pmid":"https://pubmed.ncbi.nlm.nih.gov/23180781"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1147","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1228/18788384/gks1147.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1228/18788384/gks1147.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032907885","display_name":"Karin Breuer","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Karin Breuer","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004236558","display_name":"Amir Foroushani","orcid":"https://orcid.org/0000-0003-2748-3009"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141766778","display_name":"Teagasc - The Irish Agriculture and Food Development Authority","ror":"https://ror.org/03sx84n71","country_code":"IE","type":"facility","lineage":["https://openalex.org/I141766778"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA","IE"],"is_corresponding":false,"raw_author_name":"Amir K. Foroushani","raw_affiliation_strings":["Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, County Meath, Ireland and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, County Meath, Ireland and","institution_ids":["https://openalex.org/I141766778"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050640673","display_name":"Matthew R. Laird","orcid":"https://orcid.org/0000-0003-0967-3175"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Matthew R. Laird","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035950254","display_name":"Carol Chen","orcid":"https://orcid.org/0000-0003-1022-5978"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Carol Chen","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017600873","display_name":"Anastasia Sribnaia","orcid":"https://orcid.org/0000-0003-1282-7139"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anastasia Sribnaia","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028229255","display_name":"Raymond Lo","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Raymond Lo","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062211058","display_name":"Geoffrey L. Winsor","orcid":"https://orcid.org/0000-0001-6848-1638"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Geoffrey L. Winsor","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066530115","display_name":"Robert E. W. Hancock","orcid":"https://orcid.org/0000-0001-5989-8503"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert E. W. Hancock","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050197558","display_name":"Fiona S. L. Brinkman","orcid":"https://orcid.org/0000-0002-0584-4099"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fiona S. L. Brinkman","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, V5A1S6, Canada,","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085744778","display_name":"David J. Lynn","orcid":"https://orcid.org/0000-0003-4664-1404"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I141766778","display_name":"Teagasc - The Irish Agriculture and Food Development Authority","ror":"https://ror.org/03sx84n71","country_code":"IE","type":"facility","lineage":["https://openalex.org/I141766778"]}],"countries":["CA","IE"],"is_corresponding":false,"raw_author_name":"David J. Lynn","raw_affiliation_strings":["Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, County Meath, Ireland and","University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Animal & Bioscience Research Department, AGRIC, Teagasc, Grange, Dunsany, County Meath, Ireland and","institution_ids":["https://openalex.org/I141766778"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5032907885"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.1362,"has_fulltext":true,"cited_by_count":1379,"citation_normalized_percentile":{"value":0.98819315,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D1228","last_page":"D1233"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13410","display_name":"Immune responses and vaccinations","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13410","display_name":"Immune responses and vaccinations","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/innate-immune-system","display_name":"Innate immune system","score":0.860565185546875},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7731688618659973},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.572909951210022},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4992988109588623},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.4719865620136261},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4653395414352417},{"id":"https://openalex.org/keywords/immunity","display_name":"Immunity","score":0.426408588886261},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2785399556159973},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.27051037549972534},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2462935745716095},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.24254029989242554}],"concepts":[{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.860565185546875},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7731688618659973},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.572909951210022},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4992988109588623},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.4719865620136261},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4653395414352417},{"id":"https://openalex.org/C2779341262","wikidata":"https://www.wikidata.org/wiki/Q182581","display_name":"Immunity","level":3,"score":0.426408588886261},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2785399556159973},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27051037549972534},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2462935745716095},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.24254029989242554},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gks1147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1147","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1228/18788384/gks1147.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23180781","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23180781","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:t-stor.teagasc.ie:11019/336","is_oa":false,"landing_page_url":"http://hdl.handle.net/11019/336","pdf_url":null,"source":{"id":"https://openalex.org/S4306402356","display_name":"T-St\u00f3r (Teagasc)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141766778","host_organization_name":"Teagasc - The Irish Agriculture and Food Development Authority","host_organization_lineage":["https://openalex.org/I141766778"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.663.6164","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.663.6164","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://info-centre.jenage.de/assets/pdfs/library/breueretal_NuclAcidsRes_2013.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2536432","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3531080","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3531080","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531080","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1147","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1147","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1228/18788384/gks1147.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G6173640100","display_name":null,"funder_award_id":"223411","funder_id":"https://openalex.org/F4320338377","funder_display_name":"FP7 Health"},{"id":"https://openalex.org/G793586166","display_name":"Proteomics Standards International Molecular Exchange - Systematic Capture of Published Molecular Interaction Data","funder_award_id":"223411","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320849","display_name":"Teagasc","ror":"https://ror.org/03sx84n71"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2052685738.pdf","grobid_xml":"https://content.openalex.org/works/W2052685738.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1498834900","https://openalex.org/W1542595575","https://openalex.org/W1978695171","https://openalex.org/W1995683190","https://openalex.org/W2006448899","https://openalex.org/W2012441269","https://openalex.org/W2013009523","https://openalex.org/W2017248899","https://openalex.org/W2054684559","https://openalex.org/W2088412871","https://openalex.org/W2125810455","https://openalex.org/W2132034930","https://openalex.org/W2133439754","https://openalex.org/W2148067809","https://openalex.org/W2148702126","https://openalex.org/W2155142785","https://openalex.org/W2157014707","https://openalex.org/W2158439765","https://openalex.org/W2159675211","https://openalex.org/W2163512735","https://openalex.org/W2163783674","https://openalex.org/W2165253681","https://openalex.org/W2166311080","https://openalex.org/W2170432219"],"related_works":["https://openalex.org/W2701062589","https://openalex.org/W4308914582","https://openalex.org/W4388126069","https://openalex.org/W2066136773","https://openalex.org/W2565121077","https://openalex.org/W1495541589","https://openalex.org/W2085384747","https://openalex.org/W2567393658","https://openalex.org/W2106071040","https://openalex.org/W2087547757"],"abstract_inverted_index":{"InnateDB":[0,38,73,106,134,167],"(http://www.innatedb.com)":[1],"is":[2],"an":[3],"integrated":[4,126,170],"analysis":[5,147,172],"platform":[6,173],"that":[7],"has":[8,107],"been":[9],"specifically":[10],"designed":[11],"to":[12,35,57,76,89,124,133],"facilitate":[13],"systems-level":[14],"analyses":[15],"of":[16,30,55,82,87,112,122,154,163],"mammalian":[17,59],"innate":[18,90,96,149],"immunity":[19,97],"networks,":[20,98],"pathways":[21,67,99],"and":[22,33,45,51,68,100,114,151],"genes.":[23],"In":[24,70],"this":[25,175],"article,":[26],"we":[27,118],"provide":[28],"details":[29],"recent":[31,161],"updates":[32],"improvements":[34,123],"the":[36,72,110,152,160,168],"database.":[37],"now":[39],"contains":[40],">196":[41],"000":[42,84],"human,":[43],"mouse":[44],"bovine":[46,164],"experimentally":[47],"validated":[48],"molecular":[49,85],"interactions":[50,86],"3000":[52],"pathway":[53],"annotations":[54],"relevance":[56,88],"all":[58],"cellular":[60],"systems":[61],"(i.e.":[62],"not":[63],"just":[64],"immune":[65],"relevant":[66],"interactions).":[69],"addition,":[71],"team":[74],"has,":[75],"date,":[77],"manually":[78],"curated":[79],"in":[80],"excess":[81],"18":[83],"immunity,":[91,150],"providing":[92],"unprecedented":[93],"insight":[94],"into":[95],"their":[101],"component":[102],"molecules.":[103],"More":[104],"recently,":[105],"also":[108],"initiated":[109],"curation":[111],"allergy-":[113],"asthma-related":[115],"interactions.":[116],"Furthermore,":[117],"report":[119],"a":[120],"range":[121],"our":[125],"bioinformatics":[127],"solutions":[128],"including":[129],"web":[130],"service":[131],"access":[132],"interaction":[135],"data":[136,165],"using":[137],"Proteomics":[138],"Standards":[139],"Initiative":[140],"Common":[141],"Query":[142],"Interface,":[143],"enhanced":[144],"Gene":[145],"Ontology":[146],"for":[148,174],"availability":[153],"new":[155],"network":[156,171],"visualizations":[157],"tools.":[158],"Finally,":[159],"integration":[162],"makes":[166],"first":[169],"agriculturally":[176],"important":[177],"model":[178],"organism.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":84},{"year":2024,"cited_by_count":142},{"year":2023,"cited_by_count":160},{"year":2022,"cited_by_count":151},{"year":2021,"cited_by_count":191},{"year":2020,"cited_by_count":204},{"year":2019,"cited_by_count":108},{"year":2018,"cited_by_count":99},{"year":2017,"cited_by_count":74},{"year":2016,"cited_by_count":67},{"year":2015,"cited_by_count":38},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-13T08:25:38.343686","created_date":"2025-10-10T00:00:00"}