{"id":"https://openalex.org/W2007178799","doi":"https://doi.org/10.1093/nar/gks1109","title":"PIECE: a database for plant gene structure comparison and evolution","display_name":"PIECE: a database for plant gene structure comparison and evolution","publication_year":2012,"publication_date":"2012-11-23","ids":{"openalex":"https://openalex.org/W2007178799","doi":"https://doi.org/10.1093/nar/gks1109","mag":"2007178799","pmid":"https://pubmed.ncbi.nlm.nih.gov/23180792"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1109","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1159/18787192/gks1109.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1159/18787192/gks1109.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100630722","display_name":"Yi Wang","orcid":"https://orcid.org/0000-0002-4706-8171"},"institutions":[{"id":"https://openalex.org/I4210140558","display_name":"Western Regional Research Center","ror":"https://ror.org/03x7fn667","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210140558"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Wang","raw_affiliation_strings":["USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710, USA","institution_ids":["https://openalex.org/I4210140558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004622452","display_name":"Frank M. You","orcid":"https://orcid.org/0000-0003-4424-6179"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Frank M. You","raw_affiliation_strings":["Cereal Research Center, Agriculture and Agri-Food Canada, Winnipeg, Manitoba R3T 2M9, Canada and","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cereal Research Center, Agriculture and Agri-Food Canada, Winnipeg, Manitoba R3T 2M9, Canada and","institution_ids":["https://openalex.org/I1331897569"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068427168","display_name":"Gerard R. Lazo","orcid":"https://orcid.org/0000-0002-9160-2052"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4210140558","display_name":"Western Regional Research Center","ror":"https://ror.org/03x7fn667","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210140558"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Gerard R. Lazo","raw_affiliation_strings":["USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","institution_ids":["https://openalex.org/I4210140558"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060102553","display_name":"Ming\u2010Cheng Luo","orcid":"https://orcid.org/0000-0002-9744-5887"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Ming-Cheng Luo","raw_affiliation_strings":["Department of Plant Sciences, University of California, Davis, CA 95616, USA,","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, University of California, Davis, CA 95616, USA,","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083234023","display_name":"Roger Thilmony","orcid":"https://orcid.org/0000-0002-6591-6699"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4210140558","display_name":"Western Regional Research Center","ror":"https://ror.org/03x7fn667","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210140558"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Roger Thilmony","raw_affiliation_strings":["USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","institution_ids":["https://openalex.org/I4210140558"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064639658","display_name":"Sean Gordon","orcid":"https://orcid.org/0000-0003-3431-5804"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4210140558","display_name":"Western Regional Research Center","ror":"https://ror.org/03x7fn667","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210140558"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Sean Gordon","raw_affiliation_strings":["USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","institution_ids":["https://openalex.org/I4210140558"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031755661","display_name":"Shahryar F. Kianian","orcid":"https://orcid.org/0000-0003-4968-3140"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Shahryar F. Kianian","raw_affiliation_strings":["Department of Plant Sciences, North Dakota State University, Fargo, ND 58105, USA","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, North Dakota State University, Fargo, ND 58105, USA","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029670569","display_name":"Yong Gu","orcid":"https://orcid.org/0000-0002-2575-4744"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]},{"id":"https://openalex.org/I4210140558","display_name":"Western Regional Research Center","ror":"https://ror.org/03x7fn667","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210140558"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Yong Q. Gu","raw_affiliation_strings":["USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","Agriculture and Agri-Food Canada, Ottawa, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710,","institution_ids":["https://openalex.org/I4210140558"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada, Ottawa, Canada","institution_ids":["https://openalex.org/I1331897569"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":1.6216,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.82412224,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D1159","last_page":"D1166"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8220961093902588},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6509088277816772},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6132892370223999},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.5606555342674255},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.5558922290802002},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5083672404289246},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4784686267375946},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.4599214792251587},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.45827651023864746},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4572162330150604},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4485453963279724},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4243600368499756},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10224637389183044}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8220961093902588},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6509088277816772},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6132892370223999},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.5606555342674255},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.5558922290802002},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5083672404289246},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4784686267375946},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4599214792251587},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.45827651023864746},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4572162330150604},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4485453963279724},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4243600368499756},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10224637389183044}],"mesh":[{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gks1109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1109","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1159/18787192/gks1109.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2536464","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3531150","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3531150","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531150","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmid:23180792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23180792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.830.9959","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.830.9959","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2012/11/23/nar.gks1109.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.844.2597","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.844.2597","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2012/11/23/nar.gks1109.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.850.7655","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.850.7655","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/41/D1/D1159.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.859.7635","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.859.7635","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/41/D1/D1159.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1109","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1159/18787192/gks1109.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4923687835","display_name":"Physical Mapping of the Wheat D Genome","funder_award_id":"0701916","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G864647273","display_name":"Construction of High Resolution Physical Maps for Large Plant Genomes","funder_award_id":"0822100","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007178799.pdf","grobid_xml":"https://content.openalex.org/works/W2007178799.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1529607257","https://openalex.org/W1849762302","https://openalex.org/W1966324161","https://openalex.org/W1968733465","https://openalex.org/W1975957489","https://openalex.org/W1991342515","https://openalex.org/W2012128982","https://openalex.org/W2031611770","https://openalex.org/W2047729281","https://openalex.org/W2065496472","https://openalex.org/W2079398594","https://openalex.org/W2086982662","https://openalex.org/W2098681555","https://openalex.org/W2104515939","https://openalex.org/W2110845299","https://openalex.org/W2116810061","https://openalex.org/W2120772351","https://openalex.org/W2132926880","https://openalex.org/W2134196182","https://openalex.org/W2135621733","https://openalex.org/W2137986897","https://openalex.org/W2141292707","https://openalex.org/W2141885858","https://openalex.org/W2142078770","https://openalex.org/W2143578996","https://openalex.org/W2145091349","https://openalex.org/W2151404319","https://openalex.org/W2163851351","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2109717569","https://openalex.org/W2041335525","https://openalex.org/W2334012009","https://openalex.org/W2521866209","https://openalex.org/W3023271652","https://openalex.org/W2085028062","https://openalex.org/W2187207551","https://openalex.org/W2282348497","https://openalex.org/W2069184423","https://openalex.org/W1976142521"],"abstract_inverted_index":{"Gene":[0],"families":[1],"often":[2],"show":[3],"degrees":[4],"of":[5,9,20,91,118,146,154,173],"differences":[6],"in":[7,176],"terms":[8],"exon-intron":[10],"structures":[11,22],"depending":[12],"on":[13,72],"their":[14,27],"distinct":[15],"evolutionary":[16,28],"histories.":[17],"Comparative":[18],"analysis":[19],"gene":[21,81,100,112,115,120,155,164,174],"is":[23,158],"important":[24],"for":[25,45,79,88,97,110,150,162],"understanding":[26],"and":[29,48,51,93,128,166],"functional":[30],"relationships":[31],"within":[32,136],"plant":[33,65,177],"species.":[34],"Here,":[35],"we":[36],"present":[37],"a":[38,85,94,99,142,159],"comparative":[39],"genomics":[40],"database":[41,55],"named":[42],"PIECE":[43,83,139,157],"(http://wheat.pw.usda.gov/piece)":[44],"Plant":[46],"Intron":[47],"Exon":[49],"Comparison":[50],"Evolution":[52],"studies.":[53],"The":[54,114],"contains":[56],"all":[57],"the":[58,106,125,137,147,171],"annotated":[59],"genes":[60,68],"extracted":[61],"from":[62],"25":[63],"sequenced":[64],"genomes.":[66,178],"These":[67],"were":[69,77],"classified":[70],"based":[71],"Pfam":[73],"motifs.":[74],"Phylogenetic":[75],"trees":[76],"pre-constructed":[78],"each":[80,111],"category.":[82],"provides":[84,141,167],"user-friendly":[86],"interface":[87],"different":[89],"types":[90],"searches":[92],"graphical":[95],"viewer":[96],"displaying":[98],"structure":[101,116,175],"pattern":[102],"diagram":[103],"linked":[104],"to":[105],"resulting":[107],"bootstrapped":[108],"dendrogram":[109],"family.":[113],"evolution":[117,172],"orthologous":[119],"groups":[121],"was":[122],"determined":[123],"using":[124],"GLOOME,":[126],"Exalign":[127],"GECA":[129],"software":[130],"programs":[131],"that":[132],"can":[133],"be":[134],"accessed":[135],"database.":[138],"also":[140],"web":[143],"server":[144],"version":[145],"software,":[148],"GSDraw,":[149],"drawing":[151],"schematic":[152],"diagrams":[153],"structures.":[156],"powerful":[160],"tool":[161],"comparing":[163],"sequences":[165],"valuable":[168],"insights":[169],"into":[170]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
