{"id":"https://openalex.org/W2073798474","doi":"https://doi.org/10.1093/nar/gks1063","title":"MetalPDB: a database of metal sites in biological macromolecular structures","display_name":"MetalPDB: a database of metal sites in biological macromolecular structures","publication_year":2012,"publication_date":"2012-11-15","ids":{"openalex":"https://openalex.org/W2073798474","doi":"https://doi.org/10.1093/nar/gks1063","mag":"2073798474","pmid":"https://pubmed.ncbi.nlm.nih.gov/23155064"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1063","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D312/3606316/gks1063.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D312/3606316/gks1063.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079457434","display_name":"Claudia Andreini","orcid":"https://orcid.org/0000-0003-4329-8225"},"institutions":[{"id":"https://openalex.org/I4210144939","display_name":"Interuniversity Consortium for Magnetic Resonance","ror":"https://ror.org/04v403p80","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210144939"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Claudia Andreini","raw_affiliation_strings":["Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto, Fiorentino, Italy. andreini@cerm.unifi.it","Magnetic Resonance Center (CERM)\u2013University of Florence, Via L. Sacconi 6,50019 Sesto Fiorentino,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto, Fiorentino, Italy. andreini@cerm.unifi.it","institution_ids":["https://openalex.org/I4210144939"]},{"raw_affiliation_string":"Magnetic Resonance Center (CERM)\u2013University of Florence, Via L. Sacconi 6,50019 Sesto Fiorentino,Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058680339","display_name":"Gabriele Cavallaro","orcid":"https://orcid.org/0000-0002-3239-9904"},"institutions":[{"id":"https://openalex.org/I4210144939","display_name":"Interuniversity Consortium for Magnetic Resonance","ror":"https://ror.org/04v403p80","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210144939"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gabriele Cavallaro","raw_affiliation_strings":["Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","1Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I4210144939","https://openalex.org/I45084792"]},{"raw_affiliation_string":"1Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011905067","display_name":"Serena Lorenzini","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144939","display_name":"Interuniversity Consortium for Magnetic Resonance","ror":"https://ror.org/04v403p80","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210144939"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Serena Lorenzini","raw_affiliation_strings":["Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","1Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I4210144939","https://openalex.org/I45084792"]},{"raw_affiliation_string":"1Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084306542","display_name":"Antonio Rosato","orcid":"https://orcid.org/0000-0001-6172-0368"},"institutions":[{"id":"https://openalex.org/I4210144939","display_name":"Interuniversity Consortium for Magnetic Resonance","ror":"https://ror.org/04v403p80","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210144939"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonio Rosato","raw_affiliation_strings":["Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","1Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I4210144939","https://openalex.org/I45084792"]},{"raw_affiliation_string":"1Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019 Sesto Fiorentino, Italy and 2Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy","institution_ids":["https://openalex.org/I45084792"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.5532,"has_fulltext":false,"cited_by_count":238,"citation_normalized_percentile":{"value":0.89832,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D312","last_page":"D319"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.636754035949707},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5703829526901245},{"id":"https://openalex.org/keywords/macromolecule","display_name":"Macromolecule","score":0.5567686557769775},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5016834735870361},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4914308786392212},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.45940011739730835},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3753412663936615},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34397372603416443},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.3214552402496338},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1677793264389038},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.16383740305900574},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.15968945622444153},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12359121441841125}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.636754035949707},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5703829526901245},{"id":"https://openalex.org/C204389451","wikidata":"https://www.wikidata.org/wiki/Q178593","display_name":"Macromolecule","level":2,"score":0.5567686557769775},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5016834735870361},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4914308786392212},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.45940011739730835},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3753412663936615},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34397372603416443},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3214552402496338},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1677793264389038},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.16383740305900574},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.15968945622444153},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12359121441841125},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008667","descriptor_name":"Metalloproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gks1063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1063","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D312/3606316/gks1063.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23155064","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23155064","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmid:29077942","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29077942","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:flore.unifi.it:2158/780119","is_oa":true,"landing_page_url":"http://hdl.handle.net/2158/780119","pdf_url":"http://hdl.handle.net/2158/780119","source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.776.5554","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.776.5554","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/7e/c4/gks1063.PMC3531106.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2536443","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3531106","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3531106","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531106","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1063","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D312/3606316/gks1063.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2073798474.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W67402001","https://openalex.org/W590329895","https://openalex.org/W1503466211","https://openalex.org/W1567976162","https://openalex.org/W1568956219","https://openalex.org/W1964635284","https://openalex.org/W1984798209","https://openalex.org/W1994002004","https://openalex.org/W1995752075","https://openalex.org/W1997938203","https://openalex.org/W2016088798","https://openalex.org/W2025454110","https://openalex.org/W2029678983","https://openalex.org/W2034971743","https://openalex.org/W2037325012","https://openalex.org/W2039122688","https://openalex.org/W2040346754","https://openalex.org/W2050945967","https://openalex.org/W2051628563","https://openalex.org/W2052498582","https://openalex.org/W2052979701","https://openalex.org/W2061015896","https://openalex.org/W2064186839","https://openalex.org/W2066662117","https://openalex.org/W2068022490","https://openalex.org/W2075736052","https://openalex.org/W2084168858","https://openalex.org/W2098770192","https://openalex.org/W2099672497","https://openalex.org/W2101337181","https://openalex.org/W2114520383","https://openalex.org/W2116398954","https://openalex.org/W2125123409","https://openalex.org/W2127565562","https://openalex.org/W2128653811","https://openalex.org/W2139891610","https://openalex.org/W2140695410","https://openalex.org/W2141885858","https://openalex.org/W2150541721","https://openalex.org/W2151687360","https://openalex.org/W2158283084","https://openalex.org/W2160140570","https://openalex.org/W2166159407","https://openalex.org/W2170441710","https://openalex.org/W4233334497","https://openalex.org/W4242129279","https://openalex.org/W4302936063","https://openalex.org/W4320301318","https://openalex.org/W6633951679"],"related_works":["https://openalex.org/W2044014390","https://openalex.org/W1846316342","https://openalex.org/W1984670152","https://openalex.org/W4210447090","https://openalex.org/W2083665351","https://openalex.org/W2123419409","https://openalex.org/W2003172604","https://openalex.org/W2043468722","https://openalex.org/W2969507004","https://openalex.org/W2768531357"],"abstract_inverted_index":{"MetalPDB":[0,19,52,83,109,180],"(http://metalweb.cerm.unifi.it/)":[1],"is":[2,61,133,141],"a":[3,78,145,157,171],"database":[4],"providing":[5],"information":[6,113],"on":[7,114,189],"metal-binding":[8],"sites":[9,22],"detected":[10],"in":[11,103],"the":[12,33,37,41,45,62,97,134,139,168],"three-dimensional":[13],"(3D)":[14],"structures":[15,67],"of":[16,40,44,51,64,92,137,152,170,173],"biological":[17],"macromolecules.":[18],"represents":[20],"such":[21,121,156],"as":[23,122],"3D":[24],"templates,":[25],"called":[26],"Minimal":[27],"Functional":[28],"Sites":[29],"(MFSs),":[30],"which":[31],"describe":[32],"local":[34],"environment":[35],"around":[36],"metal(s)":[38],"independently":[39],"larger":[42],"context":[43],"macromolecular":[46],"structure.":[47],"The":[48],"2018":[49],"update":[50],"includes":[53],"new":[54],"contents":[55],"and":[56,102,176],"tools.":[57],"A":[58,129],"major":[59,131],"extension":[60],"inclusion":[63],"proteins":[65],"whose":[66],"do":[68],"not":[69],"contain":[70,77],"metal":[71,94],"ions":[72],"although":[73],"their":[74,190],"sequences":[75],"potentially":[76],"known":[79],"MFS.":[80],"In":[81],"addition,":[82],"now":[84],"provides":[85],"extensive":[86],"statistical":[87,112],"analyses":[88,188],"addressing":[89],"several":[90],"aspects":[91,116],"general":[93],"usage":[95],"within":[96],"PDB,":[98],"across":[99],"protein":[100],"families":[101],"catalysis.":[104],"Users":[105],"can":[106],"also":[107],"query":[108,165],"to":[110,179,184],"extract":[111],"structural":[115],"associated":[117],"with":[118],"individual":[119],"metals,":[120],"preferred":[123],"coordination":[124],"geometries":[125],"or":[126],"aminoacidic":[127],"environment.":[128],"further":[130],"improvement":[132],"functional":[135,158],"annotation":[136,140],"MFSs;":[138],"manually":[142],"performed":[143],"via":[144],"password-protected":[146],"annotator":[147],"interface.":[148],"At":[149],"present,":[150],"\u223c50%":[151],"all":[153],"MFSs":[154],"have":[155],"annotation.":[159],"Other":[160],"noteworthy":[161],"improvements":[162],"are":[163],"bulk":[164],"functionality,":[166],"through":[167],"upload":[169],"list":[172],"PDB":[174],"identifiers,":[175],"ftp":[177],"access":[178],"contents,":[181],"allowing":[182],"users":[183],"carry":[185],"out":[186],"in-depth":[187],"own":[191],"computational":[192],"infrastructure.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":32},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
