{"id":"https://openalex.org/W2041703764","doi":"https://doi.org/10.1093/nar/gks1014","title":"COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals","display_name":"COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals","publication_year":2012,"publication_date":"2012-11-29","ids":{"openalex":"https://openalex.org/W2041703764","doi":"https://doi.org/10.1093/nar/gks1014","mag":"2041703764","pmid":"https://pubmed.ncbi.nlm.nih.gov/23203868"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks1014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1014","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1014/3585866/gks1014.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1014/3585866/gks1014.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082891083","display_name":"Takeshi Obayashi","orcid":"https://orcid.org/0000-0002-3106-722X"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Takeshi Obayashi","raw_affiliation_strings":["Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, Japan","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067291655","display_name":"Yasunobu Okamura","orcid":"https://orcid.org/0000-0001-9847-9037"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasunobu Okamura","raw_affiliation_strings":["Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933"]},{"raw_affiliation_string":"1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010592652","display_name":"Satoshi Ito","orcid":"https://orcid.org/0009-0001-8984-5215"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Satoshi Ito","raw_affiliation_strings":["Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933"]},{"raw_affiliation_string":"1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066657051","display_name":"Shu Tadaka","orcid":"https://orcid.org/0000-0002-8256-0735"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shu Tadaka","raw_affiliation_strings":["Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933"]},{"raw_affiliation_string":"1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091869411","display_name":"Ikuko N. Motoike","orcid":"https://orcid.org/0000-0002-5528-7964"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ikuko N. Motoike","raw_affiliation_strings":["Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933"]},{"raw_affiliation_string":"1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I201537933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018416641","display_name":"Kengo Kinoshita","orcid":"https://orcid.org/0000-0003-3453-2171"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kengo Kinoshita","raw_affiliation_strings":["1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan"],"affiliations":[{"raw_affiliation_string":"1Graduate School of Information Sciences, Tohoku University, Sendai 980-8679, 2Tohoku Medical Megabank Organization, Tohoku University, Sendai 980-8573 and 3Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan","institution_ids":["https://openalex.org/I201537933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5082891083"],"corresponding_institution_ids":["https://openalex.org/I201537933"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.7817,"has_fulltext":true,"cited_by_count":81,"citation_normalized_percentile":{"value":0.97046033,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"41","issue":"D1","first_page":"D1014","last_page":"D1020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9732000231742859,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9445831775665283},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6198239326477051},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6180042028427124},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6155918836593628},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5579097270965576},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4918835163116455},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4855901598930359},{"id":"https://openalex.org/keywords/orthologous-gene","display_name":"Orthologous Gene","score":0.468568354845047},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4192819595336914},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4123760163784027},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3757169842720032},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.31707924604415894},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18481609225273132}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9445831775665283},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6198239326477051},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6180042028427124},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6155918836593628},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5579097270965576},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4918835163116455},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4855901598930359},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.468568354845047},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4192819595336914},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4123760163784027},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3757169842720032},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.31707924604415894},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18481609225273132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gks1014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1014","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1014/3585866/gks1014.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23203868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23203868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.936.3884","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.936.3884","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/11/15/nar.gkq1147.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.958.891","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.958.891","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/39/suppl_1/D1016.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2590211","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531062","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks1014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks1014","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D1014/3585866/gks1014.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G8546646505","display_name":null,"funder_award_id":"CREST","funder_id":"https://openalex.org/F4320320907","funder_display_name":"Japan Science and Technology Corporation"}],"funders":[{"id":"https://openalex.org/F4320320907","display_name":"Japan Science and Technology Corporation","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2041703764.pdf","grobid_xml":"https://content.openalex.org/works/W2041703764.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1570050666","https://openalex.org/W1806630989","https://openalex.org/W1854214752","https://openalex.org/W1970187347","https://openalex.org/W1982001921","https://openalex.org/W1995869668","https://openalex.org/W1998767819","https://openalex.org/W2024858956","https://openalex.org/W2029617325","https://openalex.org/W2032096967","https://openalex.org/W2034950225","https://openalex.org/W2042799353","https://openalex.org/W2057545775","https://openalex.org/W2082463698","https://openalex.org/W2082990265","https://openalex.org/W2083479872","https://openalex.org/W2096525273","https://openalex.org/W2101053282","https://openalex.org/W2104693064","https://openalex.org/W2106596862","https://openalex.org/W2107249189","https://openalex.org/W2115111790","https://openalex.org/W2119582780","https://openalex.org/W2122863289","https://openalex.org/W2125926930","https://openalex.org/W2135714434","https://openalex.org/W2139099478","https://openalex.org/W2142570576","https://openalex.org/W2155142785","https://openalex.org/W2162142896","https://openalex.org/W2165253681","https://openalex.org/W2170989872","https://openalex.org/W4231170962"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2101501829","https://openalex.org/W2985427592","https://openalex.org/W2003194288","https://openalex.org/W2060263731","https://openalex.org/W1508526936","https://openalex.org/W2126673251","https://openalex.org/W2145189015","https://openalex.org/W2096082161"],"abstract_inverted_index":{"Coexpressed":[0],"gene":[1,9,22,56,63],"databases":[2,23],"are":[3,24],"valuable":[4],"resources":[5],"for":[6,48,92,182],"identifying":[7],"new":[8,108,120],"functions":[10],"or":[11],"functional":[12,185],"modules":[13],"in":[14,28,36,157,161,191],"metabolic":[15],"pathways":[16],"and":[17,103,105,114,160,186],"signaling":[18],"pathways.":[19],"Although":[20],"coexpressed":[21,55],"a":[25,119,178,192],"fundamental":[26],"platform":[27],"the":[29,60,69,72,77,93,143],"field":[30],"of":[31,54,62,71,184,189,194],"plant":[32],"biology,":[33],"their":[34],"use":[35],"animal":[37,50,195],"studies":[38],"is":[39],"relatively":[40],"limited.":[41],"The":[42],"COXPRESdb":[43,175],"(http://coxpresdb.jp)":[44],"provides":[45],"coexpression":[46,64,85,133,138],"relationships":[47],"multiple":[49],"species,":[51],"as":[52],"comparisons":[53],"lists":[57],"can":[58],"enhance":[59],"reliability":[61,125],"determinations.":[65],"Here,":[66],"we":[67,82],"report":[68],"updates":[70],"database,":[73],"mainly":[74],"focusing":[75],"on":[76,132],"following":[78],"two":[79],"points.":[80],"First,":[81],"updated":[83],"our":[84],"data":[86,91],"by":[87],"including":[88],"recent":[89],"microarray":[90,122],"previous":[94],"seven":[95],"species":[96,109],"(human,":[97],"mouse,":[98],"rat,":[99],"chicken,":[100],"fly,":[101],"zebrafish":[102],"nematode)":[104],"adding":[106],"four":[107],"(monkey,":[110],"dog,":[111],"budding":[112],"yeast":[113],"fission":[115],"yeast),":[116],"along":[117,164],"with":[118,139,154,165,169],"human":[121],"platform.":[123],"A":[124],"scoring":[126],"function":[127,146],"was":[128,147],"also":[129],"implemented,":[130],"based":[131],"conservation":[134],"to":[135,149],"filter":[136],"out":[137],"low":[140],"reliability.":[141],"Second,":[142],"network":[144,167],"drawing":[145],"updated,":[148],"implement":[150],"automatic":[151],"cluster":[152],"analyses":[153,156,168,183],"enrichment":[155],"Gene":[158],"Ontology":[159],"cis":[162],"elements,":[163],"interactive":[166],"Cytoscape":[170],"Web.":[171],"With":[172],"these":[173],"updates,":[174],"will":[176],"become":[177],"more":[179],"powerful":[180],"tool":[181],"regulatory":[187],"networks":[188],"genes":[190],"variety":[193],"species.":[196]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":21},{"year":2014,"cited_by_count":18},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}