{"id":"https://openalex.org/W2080124756","doi":"https://doi.org/10.1093/nar/gkr986","title":"OGEE: an online gene essentiality database","display_name":"OGEE: an online gene essentiality database","publication_year":2011,"publication_date":"2011-11-09","ids":{"openalex":"https://openalex.org/W2080124756","doi":"https://doi.org/10.1093/nar/gkr986","mag":"2080124756","pmid":"https://pubmed.ncbi.nlm.nih.gov/22075992"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr986","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr986","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkr986","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100625513","display_name":"Wei\u2010Hua Chen","orcid":"https://orcid.org/0000-0003-2168-6147"},"institutions":[{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Wei-Hua Chen","raw_affiliation_strings":["European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210153543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028520416","display_name":"Pablo M\u00ednguez","orcid":"https://orcid.org/0000-0003-4099-9421"},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pablo Minguez","raw_affiliation_strings":["Heinrich Heine University D\u00fcsseldorf, D\u00fcsseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Heinrich Heine University D\u00fcsseldorf, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075006239","display_name":"Martin J. Lercher","orcid":"https://orcid.org/0000-0003-3940-1621"},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin J. Lercher","raw_affiliation_strings":["Heinrich Heine University D\u00fcsseldorf, D\u00fcsseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Heinrich Heine University D\u00fcsseldorf, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074309419","display_name":"Peer Bork","orcid":"https://orcid.org/0000-0002-2627-833X"},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peer Bork","raw_affiliation_strings":["Heinrich Heine University D\u00fcsseldorf, D\u00fcsseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Heinrich Heine University D\u00fcsseldorf, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100625513"],"corresponding_institution_ids":["https://openalex.org/I4210153543"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.2024,"has_fulltext":false,"cited_by_count":197,"citation_normalized_percentile":{"value":0.96522343,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D901","last_page":"D906"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8751044273376465},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.8228392601013184},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.6173547506332397},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5763368606567383},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5350801348686218},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4873405396938324},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08378419280052185}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8751044273376465},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.8228392601013184},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.6173547506332397},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5763368606567383},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5350801348686218},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4873405396938324},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08378419280052185}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020043","descriptor_name":"Genes, Essential","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020043","descriptor_name":"Genes, Essential","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020043","descriptor_name":"Genes, Essential","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkr986","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr986","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22075992","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22075992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:12312","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D901","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D901","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245054","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245054","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr986","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr986","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7599999904632568,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W36110143","https://openalex.org/W1974299093","https://openalex.org/W1974482866","https://openalex.org/W1975537268","https://openalex.org/W1978244614","https://openalex.org/W1983294545","https://openalex.org/W1986618222","https://openalex.org/W1987553882","https://openalex.org/W1997751445","https://openalex.org/W1998988447","https://openalex.org/W1999828066","https://openalex.org/W2000941677","https://openalex.org/W2004637416","https://openalex.org/W2022589976","https://openalex.org/W2036408983","https://openalex.org/W2038492783","https://openalex.org/W2057545775","https://openalex.org/W2074330253","https://openalex.org/W2078178981","https://openalex.org/W2088590769","https://openalex.org/W2091393253","https://openalex.org/W2092620749","https://openalex.org/W2096525273","https://openalex.org/W2097002638","https://openalex.org/W2099059082","https://openalex.org/W2102545353","https://openalex.org/W2103017472","https://openalex.org/W2103174914","https://openalex.org/W2108385415","https://openalex.org/W2110218196","https://openalex.org/W2111906329","https://openalex.org/W2111967267","https://openalex.org/W2116586551","https://openalex.org/W2117720828","https://openalex.org/W2125469896","https://openalex.org/W2127660113","https://openalex.org/W2130790725","https://openalex.org/W2133425351","https://openalex.org/W2136278450","https://openalex.org/W2140354550","https://openalex.org/W2142579199","https://openalex.org/W2146245198","https://openalex.org/W2146538795","https://openalex.org/W2164997719","https://openalex.org/W2169916860","https://openalex.org/W2753765968","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W2115382138","https://openalex.org/W1979058569","https://openalex.org/W1883409887","https://openalex.org/W2367076742","https://openalex.org/W2050456981","https://openalex.org/W2304205445","https://openalex.org/W1912284124","https://openalex.org/W3025364102","https://openalex.org/W3127109662","https://openalex.org/W2034625591"],"abstract_inverted_index":{"OGEE":[0,124],"is":[1,10,21,125],"an":[2],"Online":[3],"GEne":[4],"Essentiality":[5],"database.":[6],"Its":[7],"main":[8],"purpose":[9],"to":[11,73,103,117],"enhance":[12],"our":[13,61],"understanding":[14],"of":[15,18,114],"the":[16,90,101,122],"essentiality":[17,79,106],"genes.":[19],"This":[20],"achieved":[22],"by":[23],"collecting":[24],"not":[25],"only":[26],"experimentally":[27],"tested":[28],"essential":[29,115],"and":[30,49,59,96,120],"non-essential":[31,118],"genes,":[32,119],"but":[33],"also":[34],"associated":[35],"gene":[36,94,105,109],"features":[37,113],"such":[38],"as":[39,86],"expression":[40],"profiles,":[41],"duplication":[42],"status,":[43],"conservation":[44],"across":[45,81],"species,":[46],"evolutionary":[47],"origins":[48],"involvement":[50],"in":[51],"embryonic":[52],"development.":[53],"We":[54],"focus":[55],"on":[56],"large-scale":[57],"experiments":[58],"complement":[60],"data":[62,70,82],"with":[63,77],"text-mining":[64],"results.":[65,123],"Genes":[66,76],"are":[67,84],"organized":[68],"into":[69],"sets":[71,83],"according":[72],"their":[74],"sources.":[75],"variable":[78],"status":[80],"tagged":[85],"conditionally":[87],"essential,":[88],"highlighting":[89],"complex":[91],"interplay":[92],"between":[93],"functions":[95],"environments.":[97],"Linked":[98],"tools":[99],"allow":[100],"user":[102],"compare":[104,112],"among":[107],"different":[108],"groups,":[110],"or":[111],"genes":[116],"visualize":[121],"freely":[126],"available":[127],"at":[128],"http://ogeedb.embl.de.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":28},{"year":2016,"cited_by_count":22},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
