{"id":"https://openalex.org/W2089350319","doi":"https://doi.org/10.1093/nar/gkr967","title":"PINA v2.0: mining interactome modules","display_name":"PINA v2.0: mining interactome modules","publication_year":2011,"publication_date":"2011-11-08","ids":{"openalex":"https://openalex.org/W2089350319","doi":"https://doi.org/10.1093/nar/gkr967","mag":"2089350319","pmid":"https://pubmed.ncbi.nlm.nih.gov/22067443"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr967","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr967","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D862/16957703/gkr967.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D862/16957703/gkr967.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076066174","display_name":"Mark J. Cowley","orcid":"https://orcid.org/0000-0002-9519-5714"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Mark J. Cowley","raw_affiliation_strings":["Cancer Research Program, Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010610318","display_name":"Mark Pinese","orcid":"https://orcid.org/0000-0001-5078-6687"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Mark Pinese","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057342873","display_name":"Karin S. Kassahn","orcid":"https://orcid.org/0000-0002-1662-3355"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Karin S. Kassahn","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003002360","display_name":"Nicola Waddell","orcid":"https://orcid.org/0000-0002-3950-2476"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Nic Waddell","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039916111","display_name":"John V. Pearson","orcid":"https://orcid.org/0000-0003-0904-4598"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"John V. Pearson","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040120471","display_name":"Sean M. Grimmond","orcid":"https://orcid.org/0000-0002-8102-7998"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Sean M. Grimmond","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089677089","display_name":"Andrew V. Biankin","orcid":"https://orcid.org/0000-0002-0362-5597"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Andrew V. Biankin","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033102814","display_name":"Sampsa Hautaniemi","orcid":"https://orcid.org/0000-0002-7749-2694"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]},{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Sampsa Hautaniemi","raw_affiliation_strings":["Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program, 2Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010, 3Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia and 4Genome-Scale Biology Program, Institute of Biomedicine, University of Helsinki, Helsinki 00014, Finland","institution_ids":["https://openalex.org/I136750679","https://openalex.org/I165143802","https://openalex.org/I133731052"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068746343","display_name":"Jianmin Wu","orcid":"https://orcid.org/0000-0002-8876-128X"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jianmin Wu","raw_affiliation_strings":["Cancer Research Program,","Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010,","Garvan Institute of Medical Research, Darlinghurst, Australia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Program,","institution_ids":[]},{"raw_affiliation_string":"Peter Wills Bioinformatics Centre, Garvan Institute of Medical Research, Darlinghurst, Sydney NSW 2010,","institution_ids":["https://openalex.org/I136750679"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5076066174"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.9368,"has_fulltext":true,"cited_by_count":364,"citation_normalized_percentile":{"value":0.97840142,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D862","last_page":"D865"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.9480831623077393},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.644563615322113},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6342097520828247},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5995208621025085},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5367506742477417},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5351797938346863},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.5163201689720154},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5005834102630615},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.46519720554351807},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45569175481796265},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41706907749176025},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3628435432910919},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3370281457901001},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3362363278865814},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18907326459884644},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13852858543395996}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.9480831623077393},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.644563615322113},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6342097520828247},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5995208621025085},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5367506742477417},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5351797938346863},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.5163201689720154},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5005834102630615},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.46519720554351807},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45569175481796265},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41706907749176025},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3628435432910919},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3370281457901001},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3362363278865814},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18907326459884644},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13852858543395996},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkr967","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr967","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D862/16957703/gkr967.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22067443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22067443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3244997","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3244997","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/260132","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/260132","pdf_url":"http://hdl.handle.net/11343/260132","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.287.1722","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.287.1722","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/cb/fe/Nucleic_Acids_Res_2012_Jan_8_40(D1)_D862-D865.tar.gz","raw_type":"text"},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/94654","is_oa":true,"landing_page_url":"http://hdl.handle.net/2440/94654","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/nar/gkr967","raw_type":"Journal article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:266360","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:helda.helsinki.fi:10138/162469","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/162469","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D862","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D862","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr967","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr967","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D862/16957703/gkr967.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G4306277896","display_name":null,"funder_award_id":"631701","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320543","display_name":"Cancer Institute NSW","ror":"https://ror.org/029a54f25"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320334715","display_name":"Cancer Council NSW","ror":"https://ror.org/05gsbkp40"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2089350319.pdf","grobid_xml":"https://content.openalex.org/works/W2089350319.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1596515083","https://openalex.org/W1783384641","https://openalex.org/W2010457001","https://openalex.org/W2010768245","https://openalex.org/W2081931663","https://openalex.org/W2082048584","https://openalex.org/W2085658677","https://openalex.org/W2103017472","https://openalex.org/W2121906867","https://openalex.org/W2122863289","https://openalex.org/W2124166542","https://openalex.org/W2130687290","https://openalex.org/W2136850043","https://openalex.org/W2138255346","https://openalex.org/W2141146725","https://openalex.org/W2141885858","https://openalex.org/W2150934340","https://openalex.org/W2153624566","https://openalex.org/W2155142785","https://openalex.org/W2156166905","https://openalex.org/W2156737316","https://openalex.org/W2158439765","https://openalex.org/W2160313295","https://openalex.org/W2165106082","https://openalex.org/W2165533101","https://openalex.org/W2171437346","https://openalex.org/W2184417913","https://openalex.org/W2915108429","https://openalex.org/W2916767477","https://openalex.org/W2917375902","https://openalex.org/W4210623056","https://openalex.org/W6608852248","https://openalex.org/W6635617995"],"related_works":["https://openalex.org/W1991450028","https://openalex.org/W3089894806","https://openalex.org/W2324494114","https://openalex.org/W2551839783","https://openalex.org/W4386401670","https://openalex.org/W2956207900","https://openalex.org/W2788010167","https://openalex.org/W3214348031","https://openalex.org/W2101998831","https://openalex.org/W2790781282"],"abstract_inverted_index":{"The":[0,41,122],"Protein":[1],"Interaction":[2],"Network":[3],"Analysis":[4],"(PINA)":[5],"platform":[6],"is":[7,110,137],"a":[8,14,29,55,107],"comprehensive":[9],"web":[10,130],"resource,":[11],"which":[12],"includes":[13],"database":[15],"of":[16,31,44,51,62,74],"unified":[17],"protein-protein":[18],"interaction":[19,63],"data":[20,124],"integrated":[21],"from":[22,70,104],"six":[23,79],"manually":[24],"curated":[25],"public":[26],"databases,":[27],"and":[28,39,97,100],"set":[30],"built-in":[32],"tools":[33],"for":[34,49,78,112,132],"network":[35,56,73],"construction,":[36],"filtering,":[37],"analysis":[38,115],"visualization.":[40],"second":[42],"version":[43],"PINA":[45,136],"enhances":[46],"its":[47],"utility":[48],"studies":[50],"protein":[52,75],"interactions":[53,76],"at":[54,140],"level,":[57],"by":[58,66,88],"including":[59],"multiple":[60],"collections":[61],"modules":[64,84],"identified":[65,83],"different":[67],"clustering":[68],"approaches":[69],"the":[71,98,129],"whole":[72],"('interactome')":[77],"model":[80],"organisms.":[81],"All":[82],"are":[85,125],"fully":[86],"annotated":[87],"enriched":[89],"Gene":[90],"Ontology":[91],"terms,":[92],"KEGG":[93],"pathways,":[94],"Pfam":[95],"domains":[96],"chemical":[99],"genetic":[101],"perturbations":[102],"collection":[103],"MSigDB.":[105],"Moreover,":[106],"new":[108],"tool":[109],"provided":[111],"module":[113],"enrichment":[114],"in":[116],"addition":[117],"to":[118],"simple":[119],"query":[120],"function.":[121],"interactome":[123],"also":[126],"available":[127],"on":[128],"site":[131],"further":[133],"bioinformatics":[134],"analysis.":[135],"freely":[138],"accessible":[139],"http://cbg.garvan.unsw.edu.au/pina/.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":44},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":30},{"year":2017,"cited_by_count":44},{"year":2016,"cited_by_count":39},{"year":2015,"cited_by_count":33},{"year":2014,"cited_by_count":25},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
