{"id":"https://openalex.org/W2147790590","doi":"https://doi.org/10.1093/nar/gkr947","title":"The Genome Portal of the Department of Energy Joint Genome Institute","display_name":"The Genome Portal of the Department of Energy Joint Genome Institute","publication_year":2011,"publication_date":"2011-11-22","ids":{"openalex":"https://openalex.org/W2147790590","doi":"https://doi.org/10.1093/nar/gkr947","mag":"2147790590","pmid":"https://pubmed.ncbi.nlm.nih.gov/22110030"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr947","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr947","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkr947","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007647654","display_name":"Igor V. Grigoriev","orcid":"https://orcid.org/0000-0002-3136-8903"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"I. V. Grigoriev","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, USA. ivgrigoriev@lbl.gov","Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, USA. ivgrigoriev@lbl.gov","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021637804","display_name":"Henrik Nordberg","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Nordberg","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070737443","display_name":"Igor Shabalov","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I. Shabalov","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059683077","display_name":"Andrea Aerts","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Aerts","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007054609","display_name":"Maur\u00edcio Cantor","orcid":"https://orcid.org/0000-0002-0019-5106"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Cantor","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034020136","display_name":"David Goodstein","orcid":"https://orcid.org/0000-0001-6287-2697"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Goodstein","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049521639","display_name":"Alan Kuo","orcid":"https://orcid.org/0000-0003-3514-3530"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Kuo","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048467633","display_name":"Simon Minovitsky","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Minovitsky","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071942265","display_name":"Roman Nikitin","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Nikitin","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002783785","display_name":"Robin A. Ohm","orcid":"https://orcid.org/0000-0003-2548-0074"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. A. Ohm","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090246054","display_name":"Robert Otillar","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Otillar","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108227544","display_name":"Alexander Poliakov","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Poliakov","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020896043","display_name":"Igor Ratnere","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I. Ratnere","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054436791","display_name":"Robert Riley","orcid":"https://orcid.org/0000-0003-0224-0975"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Riley","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021107850","display_name":"Tatyana I. Smirnova","orcid":"https://orcid.org/0000-0001-7867-7116"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Smirnova","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068564092","display_name":"Daniel S. Rokhsar","orcid":"https://orcid.org/0000-0002-8704-2224"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Rokhsar","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107834893","display_name":"Inna Dubchak","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"I. Dubchak","raw_affiliation_strings":["Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, 2The Center for Integrative Genomics, University of California and 3Genomics Division, Lawrence Berkeley National Laboratory, Mailstop 84-171, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5007647654","https://openalex.org/A5107834893"],"corresponding_institution_ids":["https://openalex.org/I148283060","https://openalex.org/I196679689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":27.8778,"has_fulltext":false,"cited_by_count":570,"citation_normalized_percentile":{"value":0.99827853,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D26","last_page":"D32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7859901189804077},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7617835998535156},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.623185396194458},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5179861783981323},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4147046208381653},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.41455674171447754},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2739247679710388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2375434935092926},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23513120412826538}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7859901189804077},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7617835998535156},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.623185396194458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5179861783981323},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4147046208381653},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.41455674171447754},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2739247679710388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2375434935092926},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23513120412826538},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkr947","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr947","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22110030","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22110030","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:usdoepub-1326","is_oa":false,"landing_page_url":"http://digitalcommons.unl.edu/usdoepub/327","pdf_url":null,"source":{"id":"https://openalex.org/S4306513441","display_name":"Insecta mundi","issn_l":"0749-6737","issn":["0749-6737","1942-1354","1942-1362"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310316217","host_organization_name":"Center for Systematic Entomology","host_organization_lineage":["https://openalex.org/P4310316217"],"host_organization_lineage_names":["Center for Systematic Entomology"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"US Department of Energy Publications","raw_type":"text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt30j0g6bw","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/30j0g6bw","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D26","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D26","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245080","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245080","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:qt30j0g6bw","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/30j0g6bw","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Grigoriev, Igor V.(2011). The Genome Portal of the Department of Energy Joint Genome Institute. Nucleic Acids Research, November 2011. doi: 10.1093/nar/gkr947. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/30j0g6bw","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr947","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr947","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1490137556","https://openalex.org/W1973047225","https://openalex.org/W1982390665","https://openalex.org/W1984643266","https://openalex.org/W2000818024","https://openalex.org/W2022414939","https://openalex.org/W2027448315","https://openalex.org/W2037045595","https://openalex.org/W2090385974","https://openalex.org/W2100793782","https://openalex.org/W2103017472","https://openalex.org/W2105007918","https://openalex.org/W2109636763","https://openalex.org/W2113634873","https://openalex.org/W2118938838","https://openalex.org/W2119787018","https://openalex.org/W2123060905","https://openalex.org/W2124166542","https://openalex.org/W2127640118","https://openalex.org/W2130956021","https://openalex.org/W2132671821","https://openalex.org/W2145876138","https://openalex.org/W2148312526","https://openalex.org/W2156296225","https://openalex.org/W2162290777"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W2773861473","https://openalex.org/W1971903861","https://openalex.org/W2053972265","https://openalex.org/W2380556100"],"abstract_inverted_index":{"The":[0,80],"Department":[1],"of":[2,33,35,65,117,144,152],"Energy":[3],"(DOE)":[4],"Joint":[5],"Genome":[6,82,154],"Institute":[7,40],"(JGI)":[8],"is":[9],"a":[10,86,163],"national":[11],"user":[12,99],"facility":[13],"with":[14,128],"massive-scale":[15],"DNA":[16,36],"sequencing":[17,105],"and":[18,27,42,47,53,59,95,107,112,115,120,125,156],"analysis":[19],"capabilities":[20,50],"dedicated":[21],"to":[22,51,60,70,90,140],"advancing":[23],"genomics":[24,167],"for":[25,111],"bioenergy":[26],"environmental":[28],"applications.":[29],"Beyond":[30],"generating":[31],"tens":[32],"trillions":[34],"bases":[37],"annually,":[38],"the":[39,68,78,149,153,157],"develops":[41],"maintains":[43],"data":[44,57,73],"management":[45],"systems":[46,138],"specialized":[48,137],"analytical":[49,96],"manage":[52],"interpret":[54],"complex":[55],"genomic":[56,93],"sets,":[58],"enable":[61],"an":[62],"expanding":[63],"community":[64],"users":[66],"around":[67],"world":[69],"analyze":[71],"these":[72],"in":[74],"different":[75],"contexts":[76],"over":[77],"web.":[79],"JGI":[81,92,104],"Portal":[83,155],"(http://genome.jgi.doe.gov)":[84],"provides":[85],"unified":[87],"access":[88],"point":[89],"all":[91,102],"databases":[94],"tools.":[97],"A":[98],"can":[100],"find":[101],"DOE":[103],"projects":[106],"their":[108],"status,":[109],"search":[110],"download":[113],"assemblies":[114],"annotations":[116],"sequenced":[118,130],"genomes,":[119],"interactively":[121],"explore":[122],"those":[123],"genomes":[124],"compare":[126],"them":[127],"other":[129],"microbes,":[131],"fungi,":[132],"plants":[133],"or":[134],"metagenomes":[135],"using":[136],"tailored":[139],"each":[141],"particular":[142],"class":[143],"organisms.":[145],"We":[146],"describe":[147],"here":[148],"general":[150],"organization":[151],"most":[158],"recent":[159],"addition,":[160],"MycoCosm":[161],"(http://jgi.doe.gov/fungi),":[162],"new":[164],"integrated":[165],"fungal":[166],"resource.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":38},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":29},{"year":2017,"cited_by_count":44},{"year":2016,"cited_by_count":35},{"year":2015,"cited_by_count":49},{"year":2014,"cited_by_count":87},{"year":2013,"cited_by_count":82},{"year":2012,"cited_by_count":39}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
