{"id":"https://openalex.org/W2141292707","doi":"https://doi.org/10.1093/nar/gkr944","title":"Phytozome: a comparative platform for green plant genomics","display_name":"Phytozome: a comparative platform for green plant genomics","publication_year":2011,"publication_date":"2011-11-22","ids":{"openalex":"https://openalex.org/W2141292707","doi":"https://doi.org/10.1093/nar/gkr944","mag":"2141292707","pmid":"https://pubmed.ncbi.nlm.nih.gov/22110026"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr944","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr944","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1178/16957607/gkr944.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1178/16957607/gkr944.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034020136","display_name":"David Goodstein","orcid":"https://orcid.org/0000-0001-6287-2697"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David M. Goodstein","raw_affiliation_strings":["US Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598, USA. dmgoodstein@lbl.gov","US Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"US Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598, USA. dmgoodstein@lbl.gov","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"US Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059174249","display_name":"Shengqiang Shu","orcid":"https://orcid.org/0000-0002-4336-8994"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shengqiang Shu","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011215301","display_name":"Russell W. Howson","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Howson","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030085824","display_name":"Rochak Neupane","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rochak Neupane","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044401117","display_name":"Richard D. Hayes","orcid":"https://orcid.org/0000-0002-5236-7918"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard D. Hayes","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027564142","display_name":"Joni Fazo","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joni Fazo","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019382573","display_name":"Therese Mitros","orcid":"https://orcid.org/0000-0001-6708-3988"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Therese Mitros","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028424694","display_name":"William Dirks","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Dirks","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059033368","display_name":"Uffe Hellsten","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uffe Hellsten","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060151593","display_name":"Nicholas H. Putnam","orcid":"https://orcid.org/0000-0002-1315-782X"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Putnam","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068564092","display_name":"Daniel S. Rokhsar","orcid":"https://orcid.org/0000-0002-8704-2224"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel S. Rokhsar","raw_affiliation_strings":["U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2 The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598 and 2The Center for Integrative Genomics, University of California, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034020136"],"corresponding_institution_ids":["https://openalex.org/I196679689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":56.1547,"has_fulltext":false,"cited_by_count":5835,"citation_normalized_percentile":{"value":0.99963765,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D1178","last_page":"D1186"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8727877736091614},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7721415758132935},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.689172625541687},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.6783088445663452},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5799615383148193},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.537659227848053},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.4973011314868927},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.46646037697792053},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.46470513939857483},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3561745882034302}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8727877736091614},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7721415758132935},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.689172625541687},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6783088445663452},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5799615383148193},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.537659227848053},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.4973011314868927},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.46646037697792053},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.46470513939857483},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3561745882034302}],"mesh":[{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkr944","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr944","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1178/16957607/gkr944.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22110026","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22110026","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3245001","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245001","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt51b830z6","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/51b830z6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D1178","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D1178","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:qt51b830z6","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/51b830z6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Goodstein, David M.(2012). Phytozome: A Comparative Platform for Green Plant Genomics. Nucleic Acid Research. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/51b830z6","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr944","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr944","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1178/16957607/gkr944.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2141292707.pdf"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1537213512","https://openalex.org/W1767772592","https://openalex.org/W1972171731","https://openalex.org/W1985471440","https://openalex.org/W1990453950","https://openalex.org/W1994145712","https://openalex.org/W1997405626","https://openalex.org/W2002615469","https://openalex.org/W2008856488","https://openalex.org/W2012128982","https://openalex.org/W2012331775","https://openalex.org/W2012986985","https://openalex.org/W2014704298","https://openalex.org/W2021795499","https://openalex.org/W2022685385","https://openalex.org/W2027448315","https://openalex.org/W2029833898","https://openalex.org/W2030794394","https://openalex.org/W2038251528","https://openalex.org/W2045071699","https://openalex.org/W2057543502","https://openalex.org/W2072285646","https://openalex.org/W2075436975","https://openalex.org/W2082909190","https://openalex.org/W2085660114","https://openalex.org/W2087064593","https://openalex.org/W2094819114","https://openalex.org/W2101021876","https://openalex.org/W2103017472","https://openalex.org/W2109432203","https://openalex.org/W2114606763","https://openalex.org/W2116423958","https://openalex.org/W2120772351","https://openalex.org/W2125346198","https://openalex.org/W2130001957","https://openalex.org/W2132926880","https://openalex.org/W2135252110","https://openalex.org/W2137597742","https://openalex.org/W2139874678","https://openalex.org/W2141165178","https://openalex.org/W2141847640","https://openalex.org/W2141885858","https://openalex.org/W2144313410","https://openalex.org/W2145477956","https://openalex.org/W2145876138","https://openalex.org/W2150934173","https://openalex.org/W2151404319","https://openalex.org/W2153091158","https://openalex.org/W2153488363","https://openalex.org/W2159482845","https://openalex.org/W2162171603","https://openalex.org/W2167188257","https://openalex.org/W2167865654","https://openalex.org/W2169540909","https://openalex.org/W2171501215","https://openalex.org/W2521298622","https://openalex.org/W4210623056","https://openalex.org/W4294216483","https://openalex.org/W6680215730"],"related_works":["https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2356429006","https://openalex.org/W2155595079","https://openalex.org/W2380568150","https://openalex.org/W2353729507","https://openalex.org/W2364340602","https://openalex.org/W2129833142","https://openalex.org/W1519370197"],"abstract_inverted_index":{"The":[0],"number":[1,100],"of":[2,16,30,41,64,68,75,97,103,164],"sequenced":[3,115,126],"plant":[4,22,52,70,105,131,146],"genomes":[5],"and":[6,27,54,58,81,94,112,134,139,166],"associated":[7],"genomic":[8],"resources":[9],"is":[10],"growing":[11,99],"rapidly":[12],"with":[13,37,161],"the":[14,28,65,73,86,92,109,117,144],"advent":[15],"both":[17],"an":[18],"increased":[19],"focus":[20],"on":[21],"genomics":[23,153],"from":[24],"funding":[25],"agencies,":[26],"application":[29],"inexpensive":[31],"next":[32],"generation":[33],"sequencing.":[34],"To":[35],"interact":[36],"this":[38],"increasing":[39],"body":[40],"data,":[42],"we":[43],"have":[44],"developed":[45],"Phytozome":[46,60],"(http://www.phytozome.net),":[47],"a":[48,62,98,129],"comparative":[49,152],"hub":[50],"for":[51],"genome":[53,82,132],"gene":[55,71,77,79],"family":[56,80],"data":[57,138],"analysis.":[59],"provides":[61],"view":[63],"evolutionary":[66],"history":[67],"every":[69],"at":[72,85,116],"level":[74],"sequence,":[76],"structure,":[78],"organization,":[83],"while":[84],"same":[87],"time":[88],"providing":[89,150],"access":[90],"to":[91,143,157],"sequences":[93],"functional":[95],"annotations":[96],"(currently":[101],"25)":[102],"complete":[104],"genomes,":[106],"including":[107],"all":[108],"land":[110],"plants":[111,163],"selected":[113,124],"algae":[114],"Joint":[118],"Genome":[119],"Institute,":[120],"as":[121,123],"well":[122],"species":[125],"elsewhere.":[127],"Through":[128],"comprehensive":[130],"database":[133],"web":[135],"portal,":[136],"these":[137],"analyses":[140],"are":[141],"available":[142],"broader":[145],"science":[147],"research":[148],"community,":[149],"powerful":[151],"tools":[154],"that":[155],"help":[156],"link":[158],"model":[159],"systems":[160],"other":[162],"economic":[165],"ecological":[167],"importance.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":299},{"year":2025,"cited_by_count":528},{"year":2024,"cited_by_count":672},{"year":2023,"cited_by_count":541},{"year":2022,"cited_by_count":587},{"year":2021,"cited_by_count":593},{"year":2020,"cited_by_count":517},{"year":2019,"cited_by_count":428},{"year":2018,"cited_by_count":300},{"year":2017,"cited_by_count":315},{"year":2016,"cited_by_count":331},{"year":2015,"cited_by_count":257},{"year":2014,"cited_by_count":211},{"year":2013,"cited_by_count":173},{"year":2012,"cited_by_count":77}],"updated_date":"2026-08-15T07:11:24.734988","created_date":"2025-10-10T00:00:00"}
