{"id":"https://openalex.org/W2047144846","doi":"https://doi.org/10.1093/nar/gkr939","title":"LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes","display_name":"LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes","publication_year":2011,"publication_date":"2011-11-21","ids":{"openalex":"https://openalex.org/W2047144846","doi":"https://doi.org/10.1093/nar/gkr939","mag":"2047144846","pmid":"https://pubmed.ncbi.nlm.nih.gov/22110036"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr939","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr939","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1221/9482961/gkr939.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1221/9482961/gkr939.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101694488","display_name":"Jun Li","orcid":"https://orcid.org/0000-0002-1285-6514"},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Li","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA"],"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069152800","display_name":"Xi Dai","orcid":"https://orcid.org/0000-0002-2396-0966"},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"X. Dai","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA"],"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100338067","display_name":"Tao Liu","orcid":"https://orcid.org/0000-0001-6244-7316"},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Liu","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA"],"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025380264","display_name":"Patrick X. Zhao","orcid":"https://orcid.org/0000-0002-3460-5564"},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. X. Zhao","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA"],"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA","institution_ids":["https://openalex.org/I4210126540"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101694488"],"corresponding_institution_ids":["https://openalex.org/I4210126540"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.4986,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":{"value":0.93890013,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D1221","last_page":"D1229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12436","display_name":"Agronomic Practices and Intercropping Systems","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9105408787727356},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.8933209776878357},{"id":"https://openalex.org/keywords/medicago-truncatula","display_name":"Medicago truncatula","score":0.8767269849777222},{"id":"https://openalex.org/keywords/orthologous-gene","display_name":"Orthologous Gene","score":0.6830781102180481},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.6422674655914307},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6112786531448364},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5559984445571899},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5476353764533997},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.5087042450904846},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4984605312347412},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.48709917068481445},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.470891535282135},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.46668538451194763},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.452603280544281},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.4431798458099365},{"id":"https://openalex.org/keywords/lotus-japonicus","display_name":"Lotus japonicus","score":0.4180005192756653},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3848929703235626},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.35042789578437805},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19754421710968018},{"id":"https://openalex.org/keywords/symbiosis","display_name":"Symbiosis","score":0.10390275716781616}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9105408787727356},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.8933209776878357},{"id":"https://openalex.org/C2778339097","wikidata":"https://www.wikidata.org/wiki/Q136894","display_name":"Medicago truncatula","level":4,"score":0.8767269849777222},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.6830781102180481},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6422674655914307},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6112786531448364},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5559984445571899},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5476353764533997},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.5087042450904846},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4984605312347412},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.48709917068481445},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.470891535282135},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.46668538451194763},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.452603280544281},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4431798458099365},{"id":"https://openalex.org/C2779688875","wikidata":"https://www.wikidata.org/wiki/Q7214063","display_name":"Lotus japonicus","level":4,"score":0.4180005192756653},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3848929703235626},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.35042789578437805},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19754421710968018},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.10390275716781616},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000070116","descriptor_name":"Lotus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000070116","descriptor_name":"Lotus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000070116","descriptor_name":"Lotus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000070116","descriptor_name":"Lotus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003577","descriptor_name":"Cytochrome P-450 Enzyme System","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D007887","descriptor_name":"Fabaceae","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013559","descriptor_name":"Symbiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016695","descriptor_name":"Glycosyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016695","descriptor_name":"Glycosyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016695","descriptor_name":"Glycosyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016695","descriptor_name":"Glycosyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046913","descriptor_name":"Medicago truncatula","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046913","descriptor_name":"Medicago truncatula","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046913","descriptor_name":"Medicago truncatula","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046913","descriptor_name":"Medicago truncatula","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr939","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr939","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1221/9482961/gkr939.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22110036","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22110036","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D1221","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D1221","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245131","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245131","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr939","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr939","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1221/9482961/gkr939.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2047144846.pdf","grobid_xml":"https://content.openalex.org/works/W2047144846.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1533767717","https://openalex.org/W1626869794","https://openalex.org/W1904872924","https://openalex.org/W1975514040","https://openalex.org/W1977461710","https://openalex.org/W1978511976","https://openalex.org/W1991127465","https://openalex.org/W2008856488","https://openalex.org/W2012986985","https://openalex.org/W2020541351","https://openalex.org/W2024285907","https://openalex.org/W2024858956","https://openalex.org/W2027297419","https://openalex.org/W2058321420","https://openalex.org/W2059680574","https://openalex.org/W2066668828","https://openalex.org/W2068662512","https://openalex.org/W2080693057","https://openalex.org/W2085063163","https://openalex.org/W2088673572","https://openalex.org/W2091448229","https://openalex.org/W2094819114","https://openalex.org/W2095594212","https://openalex.org/W2097123946","https://openalex.org/W2097591011","https://openalex.org/W2099058702","https://openalex.org/W2103017472","https://openalex.org/W2105098053","https://openalex.org/W2106013632","https://openalex.org/W2106217384","https://openalex.org/W2106294566","https://openalex.org/W2110335151","https://openalex.org/W2111345274","https://openalex.org/W2116423958","https://openalex.org/W2117575205","https://openalex.org/W2122221811","https://openalex.org/W2123060905","https://openalex.org/W2124166542","https://openalex.org/W2128574835","https://openalex.org/W2128605601","https://openalex.org/W2132247062","https://openalex.org/W2132926880","https://openalex.org/W2134038950","https://openalex.org/W2141219683","https://openalex.org/W2142263762","https://openalex.org/W2144944670","https://openalex.org/W2149517531","https://openalex.org/W2150926065","https://openalex.org/W2151404319","https://openalex.org/W2152178770","https://openalex.org/W2152856196","https://openalex.org/W2155060650","https://openalex.org/W2158804744","https://openalex.org/W2166219607","https://openalex.org/W2167128631","https://openalex.org/W2170372080"],"related_works":["https://openalex.org/W2897620573","https://openalex.org/W2023219382","https://openalex.org/W2511396091","https://openalex.org/W4389573178","https://openalex.org/W2128605601","https://openalex.org/W2434809009","https://openalex.org/W2121479060","https://openalex.org/W2279891030","https://openalex.org/W2034649388","https://openalex.org/W2018033780"],"abstract_inverted_index":{"Legumes":[0],"play":[1],"a":[2],"vital":[3],"role":[4],"in":[5,23,44,73],"maintaining":[6],"the":[7,11,45,93,126,174],"nitrogen":[8,16],"cycle":[9],"of":[10,31,63,96,129,149,170],"biosphere.":[12],"They":[13],"conduct":[14],"symbiotic":[15],"fixation":[17],"through":[18],"endosymbiotic":[19],"relationships":[20],"with":[21,117],"bacteria":[22],"root":[24],"nodules.":[25],"However,":[26],"this":[27],"and":[28,38,61,70,78,83,86,104,114,125,131,139,160,167,183,197],"other":[29],"characteristics":[30],"legumes,":[32,65,99],"including":[33],"mycorrhization,":[34],"compound":[35],"leaf":[36],"development":[37],"profuse":[39],"secondary":[40],"metabolism,":[41],"are":[42],"absent":[43],"typical":[46],"model":[47,64,98],"plant":[48,110],"Arabidopsis":[49],"thaliana.":[50],"We":[51],"present":[52],"LegumeIP":[53,75,134,179],"(http://plantgrn.noble.org/LegumeIP/),":[54],"an":[55],"integrative":[56],"database":[57,91,146],"for":[58,66],"comparative":[59],"genomics":[60],"transcriptomics":[62],"studying":[67],"gene":[68,77,79,141,171,192,194,199],"function":[69],"genome":[71],"evolution":[72],"legumes.":[74],"compiles":[76],"family":[80],"information,":[81],"syntenic":[82],"phylogenetic":[84,168],"context":[85],"tissue-specific":[87],"transcriptomic":[88],"profiles.":[89],"The":[90],"holds":[92],"genomic":[94],"sequences":[95],"three":[97],"Medicago":[100],"truncatula,":[101,155],"Glycine":[102],"max":[103],"Lotus":[105],"japonicus":[106],"plus":[107],"two":[108],"reference":[109],"species,":[111],"A.":[112,161],"thaliana":[113],"Populus":[115],"trichocarpa,":[116],"annotations":[118],"based":[119,190],"on":[120,191],"UniProt,":[121],"InterProScan,":[122],"Gene":[123],"Ontology":[124],"Kyoto":[127],"Encyclopedia":[128],"Genes":[130],"Genomes":[132],"databases.":[133],"also":[135],"contains":[136],"large-scale":[137],"microarray":[138],"RNA-Seq-based":[140],"expression":[142],"data.":[143],"Our":[144],"new":[145],"is":[147],"capable":[148],"systematic":[150],"synteny":[151,196],"analysis":[152,169],"across":[153,173],"M.":[154],"G.":[156],"max,":[157],"L.":[158],"japonicas":[159],"thaliana,":[162],"as":[163,165],"well":[164],"construction":[166],"families":[172],"five":[175],"hosted":[176],"species.":[177],"Finally,":[178],"provides":[180],"comprehensive":[181],"search":[182],"visualization":[184],"tools":[185],"that":[186],"enable":[187],"flexible":[188],"queries":[189],"annotation,":[193],"family,":[195],"relative":[198],"expression.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}