{"id":"https://openalex.org/W2064060400","doi":"https://doi.org/10.1093/nar/gkr925","title":"The Gene Wiki in 2011: community intelligence applied to human gene annotation","display_name":"The Gene Wiki in 2011: community intelligence applied to human gene annotation","publication_year":2011,"publication_date":"2011-11-09","ids":{"openalex":"https://openalex.org/W2064060400","doi":"https://doi.org/10.1093/nar/gkr925","mag":"2064060400","pmid":"https://pubmed.ncbi.nlm.nih.gov/22075991"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr925","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr925","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1255/16957159/gkr925.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1255/16957159/gkr925.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087499135","display_name":"Benjamin M. Good","orcid":"https://orcid.org/0000-0002-7334-7852"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin M. Good","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. bgood@scripps.edu","Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA. bgood@scripps.edu","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064","institution_ids":["https://openalex.org/I123431417","https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002280838","display_name":"Erik Clarke","orcid":"https://orcid.org/0000-0002-2031-8791"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik L. Clarke","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064","institution_ids":["https://openalex.org/I123431417","https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050777140","display_name":"Luca de Alfaro","orcid":"https://orcid.org/0000-0003-3856-4576"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luca de Alfaro","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064","institution_ids":["https://openalex.org/I123431417","https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045408201","display_name":"Andrew I. Su","orcid":"https://orcid.org/0000-0002-9859-4104"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew I. Su","raw_affiliation_strings":["Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037 and 2Department of Computer Science, University of California, Santa Cruz, CA 95064","institution_ids":["https://openalex.org/I123431417","https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087499135"],"corresponding_institution_ids":["https://openalex.org/I123431417","https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.05,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.98273964,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D1255","last_page":"D1261"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9713000059127808,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9617000222206116,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9262375831604004},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7351745367050171},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6672298312187195},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5174880027770996},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4620051085948944}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9262375831604004},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7351745367050171},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6672298312187195},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5174880027770996},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4620051085948944}],"mesh":[{"descriptor_ui":"D004690","descriptor_name":"Encyclopedias as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004690","descriptor_name":"Encyclopedias as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004690","descriptor_name":"Encyclopedias as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004690","descriptor_name":"Encyclopedias as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr925","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr925","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1255/16957159/gkr925.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22075991","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22075991","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D1255","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D1255","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245148","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245148","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr925","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr925","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D1255/16957159/gkr925.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6200000047683716,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2064060400.pdf","grobid_xml":"https://content.openalex.org/works/W2064060400.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1550258693","https://openalex.org/W1989626479","https://openalex.org/W2050028106","https://openalex.org/W2050322686","https://openalex.org/W2052057394","https://openalex.org/W2102775690","https://openalex.org/W2107580398","https://openalex.org/W2109863203","https://openalex.org/W2127640118","https://openalex.org/W2129553551","https://openalex.org/W2237187182","https://openalex.org/W6632766574"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2034625591"],"abstract_inverted_index":{"The":[0],"Gene":[1,87,110,131,142],"Wiki":[2,88,132,143],"is":[3,57],"an":[4],"open-access":[5],"and":[6,106,148,152,155],"openly":[7],"editable":[8],"collection":[9],"of":[10,38,53,60,63,65,108,127],"Wikipedia":[11,128,163],"articles":[12,24,89,139],"about":[13,25],"human":[14],"genes.":[15],"Initiated":[16],"in":[17,90,140],"2008,":[18],"it":[19],"has":[20],"grown":[21],"to":[22,45,76],"include":[23],"more":[26,33],"than":[27,34],"10,000":[28],"genes":[29],"that,":[30],"collectively,":[31],"contain":[32],"1.4":[35],"million":[36],"words":[37],"gene-centric":[39,55],"text":[40],"with":[41,92],"extensive":[42],"citations":[43],"back":[44],"the":[46,58,61,68,77,82,93,102,109,125,135,141,161],"primary":[47,97],"scientific":[48,69],"literature.":[49],"This":[50],"growing":[51],"body":[52],"useful,":[54],"content":[56],"result":[59],"work":[62],"thousands":[64],"individuals":[66],"throughout":[67],"community.":[70],"Here,":[71],"we":[72,113],"describe":[73,101],"recent":[74],"improvements":[75],"automated":[78,117],"system":[79],"that":[80],"keeps":[81],"structured":[83],"data":[84,94],"presented":[85],"on":[86],"sync":[91],"from":[95],"trusted":[96],"databases.":[98],"We":[99],"also":[100],"expanding":[103],"contents,":[104],"editors":[105],"users":[107],"Wiki.":[111],"Finally,":[112],"introduce":[114],"a":[115],"new":[116],"system,":[118],"called":[119],"WikiTrust,":[120],"which":[121],"can":[122,144,157],"effectively":[123],"compute":[124],"quality":[126],"articles,":[129,133],"including":[130],"at":[134,150,160],"word":[136],"level.":[137],"All":[138],"be":[145,158],"freely":[146],"accessed":[147],"edited":[149],"Wikipedia,":[151],"additional":[153],"links":[154],"information":[156],"found":[159],"project's":[162],"portal":[164],"page:":[165],"http://en.wikipedia.org/wiki/Portal:Gene_Wiki.":[166]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-02T08:37:19.008085","created_date":"2025-10-10T00:00:00"}