{"id":"https://openalex.org/W2103693988","doi":"https://doi.org/10.1093/nar/gkr924","title":"ALFRED: an allele frequency resource for research and teaching","display_name":"ALFRED: an allele frequency resource for research and teaching","publication_year":2011,"publication_date":"2011-10-28","ids":{"openalex":"https://openalex.org/W2103693988","doi":"https://doi.org/10.1093/nar/gkr924","mag":"2103693988","pmid":"https://pubmed.ncbi.nlm.nih.gov/22039151"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr924","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr924","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkr924","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082516790","display_name":"Haseena Rajeevan","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"H. Rajeevan","raw_affiliation_strings":["Department of Genetics and Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052003242","display_name":"Usha Soundararajan","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"U. Soundararajan","raw_affiliation_strings":["Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113555957","display_name":"J.R. Kidd","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. R. Kidd","raw_affiliation_strings":["Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072525117","display_name":"A.J. Pakstis","orcid":"https://orcid.org/0000-0001-9066-3964"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. J. Pakstis","raw_affiliation_strings":["Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015963423","display_name":"K. K. Kidd","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. K. Kidd","raw_affiliation_strings":["Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and 2Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8005, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082516790"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6677,"has_fulltext":false,"cited_by_count":99,"citation_normalized_percentile":{"value":0.90452665,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D1010","last_page":"D1015"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8262580037117004},{"id":"https://openalex.org/keywords/allele-frequency","display_name":"Allele frequency","score":0.7745081186294556},{"id":"https://openalex.org/keywords/dbsnp","display_name":"dbSNP","score":0.7443325519561768},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.6286507844924927},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5736933350563049},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5222740173339844},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.41785457730293274},{"id":"https://openalex.org/keywords/genotype-frequency","display_name":"Genotype frequency","score":0.4140092134475708},{"id":"https://openalex.org/keywords/population-genetics","display_name":"Population genetics","score":0.4139830470085144},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.3328275680541992},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.226262629032135},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10205283761024475},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.08061802387237549}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8262580037117004},{"id":"https://openalex.org/C37463918","wikidata":"https://www.wikidata.org/wiki/Q387981","display_name":"Allele frequency","level":4,"score":0.7745081186294556},{"id":"https://openalex.org/C35794970","wikidata":"https://www.wikidata.org/wiki/Q5243761","display_name":"dbSNP","level":5,"score":0.7443325519561768},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.6286507844924927},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5736933350563049},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5222740173339844},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.41785457730293274},{"id":"https://openalex.org/C175239580","wikidata":"https://www.wikidata.org/wiki/Q656595","display_name":"Genotype frequency","level":5,"score":0.4140092134475708},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.4139830470085144},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.3328275680541992},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.226262629032135},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10205283761024475},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.08061802387237549},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013663","descriptor_name":"Teaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013663","descriptor_name":"Teaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013663","descriptor_name":"Teaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D036281","descriptor_name":"Genetic Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D036281","descriptor_name":"Genetic Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D036281","descriptor_name":"Genetic Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkr924","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr924","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22039151","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22039151","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.288.675","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.288.675","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/98/50/Nucleic_Acids_Res_2012_Jan_29_40(D1)_D1010-D1015.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.397.7139","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.397.7139","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://alfred.med.yale.edu/alfred/NAR_2011.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D1010","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D1010","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245092","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245092","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr924","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr924","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W779098844","https://openalex.org/W1967981583","https://openalex.org/W1973798273","https://openalex.org/W2027641798","https://openalex.org/W2062801880","https://openalex.org/W2079574902","https://openalex.org/W2089646842","https://openalex.org/W2096525273","https://openalex.org/W2102714321","https://openalex.org/W2107134517","https://openalex.org/W2114918896","https://openalex.org/W2119453878","https://openalex.org/W2122732537","https://openalex.org/W2127069089","https://openalex.org/W2130541747","https://openalex.org/W2132497218","https://openalex.org/W2137137328","https://openalex.org/W2137221887","https://openalex.org/W2138721296","https://openalex.org/W2140959171","https://openalex.org/W2141042406","https://openalex.org/W2145582199","https://openalex.org/W2149588035","https://openalex.org/W2149645314","https://openalex.org/W2153500954","https://openalex.org/W4231041617"],"related_works":["https://openalex.org/W2019587571","https://openalex.org/W2379541662","https://openalex.org/W2166637822","https://openalex.org/W59372684","https://openalex.org/W2350696645","https://openalex.org/W2348342388","https://openalex.org/W2124736181","https://openalex.org/W2071928984","https://openalex.org/W1976506989","https://openalex.org/W2925441048"],"abstract_inverted_index":{"ALFRED":[0,23],"(http://alfred.med.yale.edu)":[1],"is":[2,66],"a":[3,48],"free,":[4],"web":[5,125],"accessible,":[6],"curated":[7],"compilation":[8],"of":[9,34,58,87,134],"allele":[10,25,64,78,92],"frequency":[11,26,37,65,79,93],"data":[12,94,117,136],"on":[13,28,61,81],"DNA":[14],"sequence":[15],"polymorphisms":[16],"in":[17,137],"anthropologically":[18],"defined":[19],"human":[20],"populations.":[21],"Currently,":[22],"has":[24],"tables":[27,38,80],"over":[29,96],"663,400":[30],"polymorphic":[31],"sites;":[32],"170":[33],"them":[35],"have":[36,51,91,101],"for":[39,95],"more":[40],"than":[41],"100":[42],"different":[43,75],"population":[44,49,71,89],"samples.":[45],"In":[46],"ALFRED,":[47],"may":[50],"multiple":[52],"samples":[53,72,90],"with":[54,77],"each":[55],"'sample'":[56],"consisting":[57],"many":[59],"individuals":[60],"which":[62],"an":[63],"based.":[67],"There":[68],"are":[69],"3566":[70],"from":[73],"710":[74],"populations":[76],"at":[82],"least":[83],"one":[84],"polymorphism.":[85],"Fifty":[86],"those":[88],"650,000":[97],"polymorphisms.":[98],"Records":[99],"also":[100],"active":[102],"links":[103],"to":[104,130],"relevant":[105],"resources":[106],"(dbSNP,":[107],"PharmGKB,":[108],"OMIM,":[109],"Ethnologue,":[110],"etc.).":[111],"The":[112],"flexible":[113],"search":[114],"options":[115],"and":[116,119],"display":[118],"download":[120],"capabilities":[121],"available":[122],"through":[123],"the":[124,131],"interface":[126],"allow":[127],"easy":[128],"access":[129],"large":[132],"quantity":[133],"high-quality":[135],"ALFRED.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
