{"id":"https://openalex.org/W2127358324","doi":"https://doi.org/10.1093/nar/gkr919","title":"SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents","display_name":"SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents","publication_year":2011,"publication_date":"2011-11-08","ids":{"openalex":"https://openalex.org/W2127358324","doi":"https://doi.org/10.1093/nar/gkr919","mag":"2127358324","pmid":"https://pubmed.ncbi.nlm.nih.gov/22067445"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr919","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr919","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D428/9482709/gkr919.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D428/9482709/gkr919.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034849979","display_name":"Abraham Heifets","orcid":"https://orcid.org/0000-0001-8192-793X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"A. Heifets","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Toronto, Ontario M5G 1L7, Canada","University Health Network, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Toronto, Ontario M5G 1L7, Canada","institution_ids":[]},{"raw_affiliation_string":"University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052209321","display_name":"I. Jurisica","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"I. Jurisica","raw_affiliation_strings":["University Health Network, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"University Health Network, Toronto, Canada","institution_ids":["https://openalex.org/I1325899441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034849979"],"corresponding_institution_ids":["https://openalex.org/I1325899441"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.5692,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.83515305,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"40","issue":"D1","first_page":"D428","last_page":"D433"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12673","display_name":"Microbial Metabolism and Applications","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7360907793045044},{"id":"https://openalex.org/keywords/chemical-database","display_name":"Chemical database","score":0.5908029675483704},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5394068956375122},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47156259417533875},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4657749831676483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4643931984901428},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4493938088417053},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36010462045669556},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32497933506965637},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31032299995422363},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2361835241317749},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09064260125160217}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7360907793045044},{"id":"https://openalex.org/C203394866","wikidata":"https://www.wikidata.org/wiki/Q2881060","display_name":"Chemical database","level":2,"score":0.5908029675483704},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5394068956375122},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47156259417533875},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4657749831676483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4643931984901428},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4493938088417053},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36010462045669556},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32497933506965637},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31032299995422363},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2361835241317749},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09064260125160217},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D010330","descriptor_name":"Patents as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010330","descriptor_name":"Patents as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010330","descriptor_name":"Patents as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055598","descriptor_name":"Chemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr919","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr919","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D428/9482709/gkr919.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22067445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22067445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D428","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D428","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245107","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245107","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr919","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr919","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D428/9482709/gkr919.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320319966","display_name":"Ontario Ministry of Health and Long-Term Care","ror":"https://ror.org/00tjpb250"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127358324.pdf","grobid_xml":"https://content.openalex.org/works/W2127358324.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1560602983","https://openalex.org/W1827059060","https://openalex.org/W1843080641","https://openalex.org/W1966456689","https://openalex.org/W1972773608","https://openalex.org/W1997974358","https://openalex.org/W2001804590","https://openalex.org/W2013520570","https://openalex.org/W2018621056","https://openalex.org/W2021662118","https://openalex.org/W2033377040","https://openalex.org/W2033945771","https://openalex.org/W2035941656","https://openalex.org/W2039840297","https://openalex.org/W2049961577","https://openalex.org/W2064535969","https://openalex.org/W2066559205","https://openalex.org/W2070505319","https://openalex.org/W2074026532","https://openalex.org/W2083144059","https://openalex.org/W2091159098","https://openalex.org/W2107881319","https://openalex.org/W2114326383","https://openalex.org/W2114453188","https://openalex.org/W2124437675","https://openalex.org/W2125904022","https://openalex.org/W2127553917","https://openalex.org/W2130716625","https://openalex.org/W2139886086","https://openalex.org/W2279087131","https://openalex.org/W2376547867"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2095118173","https://openalex.org/W2087762413","https://openalex.org/W2003932708","https://openalex.org/W4308221833","https://openalex.org/W1503231262","https://openalex.org/W2380667145"],"abstract_inverted_index":{"The":[0],"patent":[1,22,87],"literature":[2],"is":[3,60,71,112,153],"a":[4,72],"rich":[5,29],"catalog":[6],"of":[7,31,38,55],"biologically":[8],"relevant":[9],"chemicals;":[10],"many":[11],"public":[12],"and":[13,90,123,141],"commercial":[14],"molecular":[15,101,139],"databases":[16],"contain":[17],"the":[18,48,84,100,142],"structures":[19,64],"disclosed":[20],"in":[21,68,97,114,124],"claims.":[23],"However,":[24],"patents":[25,148],"are":[26,65],"an":[27],"equally":[28],"source":[30],"metadata":[32,59,80],"about":[33],"bioactive":[34],"molecules,":[35],"including":[36],"mechanism":[37],"action,":[39],"disease":[40],"class,":[41],"homologous":[42],"experimental":[43],"series,":[44],"structural":[45,105],"alternatives,":[46],"or":[47,138],"synthetic":[49,150],"pathways":[50],"used":[51],"to":[52,77,99,104,147],"produce":[53],"molecules":[54],"interest.":[56],"Unfortunately,":[57],"this":[58,79],"discarded":[61],"when":[62],"chemical":[63,73,118,135],"deposited":[66],"separately":[67],"databases.":[69,106],"SCRIPDB":[70,82,129,152],"structure":[74],"database":[75],"designed":[76],"make":[78],"accessible.":[81],"provides":[83],"full":[85],"original":[86],"text,":[88],"reactions":[89],"relationships":[91],"described":[92],"within":[93],"any":[94],"individual":[95],"patent,":[96],"addition":[98],"files":[102],"common":[103],"We":[107],"discuss":[108],"how":[109],"such":[110],"information":[111],"valuable":[113],"medical":[115],"text":[116],"mining,":[117],"image":[119],"analysis,":[120],"reaction":[121],"extraction":[122],"silico":[125],"pharmaceutical":[126],"lead":[127],"optimization.":[128],"may":[130,144],"be":[131,145],"searched":[132],"by":[133],"exact":[134],"structure,":[136],"substructure":[137],"similarity":[140],"results":[143],"restricted":[146],"describing":[149],"routes.":[151],"available":[154],"at":[155],"http://dcv.uhnres.utoronto.ca/SCRIPDB.":[156]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
