{"id":"https://openalex.org/W2135047445","doi":"https://doi.org/10.1093/nar/gkr879","title":"CAPS-DB: a structural classification of helix-capping motifs","display_name":"CAPS-DB: a structural classification of helix-capping motifs","publication_year":2011,"publication_date":"2011-10-22","ids":{"openalex":"https://openalex.org/W2135047445","doi":"https://doi.org/10.1093/nar/gkr879","mag":"2135047445","pmid":"https://pubmed.ncbi.nlm.nih.gov/22021380"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr879","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr879","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D479/9482208/gkr879.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D479/9482208/gkr879.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007270631","display_name":"Joan Segura","orcid":"https://orcid.org/0000-0001-5593-735X"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"J. Segura","raw_affiliation_strings":["Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St James's University Hospital, Leeds LS9 7TF, UK","Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St James's University Hospital, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]},{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I130828816","https://openalex.org/I170486558","https://openalex.org/I2801331674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069297595","display_name":"Baldomero Oliva","orcid":"https://orcid.org/0000-0003-0702-0250"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"B. Oliva","raw_affiliation_strings":["Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2 Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2 Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801331674"]},{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I130828816","https://openalex.org/I170486558","https://openalex.org/I2801331674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090989775","display_name":"Narc\u00eds Fern\u00e1ndez\u2010Fuentes","orcid":"https://orcid.org/0000-0002-6421-1080"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["ES","GB"],"is_corresponding":true,"raw_author_name":"N. Fernandez-Fuentes","raw_affiliation_strings":["Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2 Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2 Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I2801331674"]},{"raw_affiliation_string":"Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, University of Leeds, St. James's University Hospital, Leeds, LS9 7TF, UK and 2Structural Bioinformatics Lab (GRIB), Universitat Pompeu Fabra-IMIM, Barcelona Research Park of Biomedicine (PRBB), 08003-Barcelona, Catalonia, Spain","institution_ids":["https://openalex.org/I130828816","https://openalex.org/I170486558","https://openalex.org/I2801331674"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5090989775"],"corresponding_institution_ids":["https://openalex.org/I130828816","https://openalex.org/I170486558","https://openalex.org/I2801331674"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.2431,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.56273436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"40","issue":"D1","first_page":"D479","last_page":"D485"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.711154580116272},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5990971922874451},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.5957506895065308},{"id":"https://openalex.org/keywords/helix","display_name":"Helix (gastropod)","score":0.5181980729103088},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.4291022717952728},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4226565957069397},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4108853340148926},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35453084111213684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2080194056034088},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1743907630443573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10922408103942871}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.711154580116272},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5990971922874451},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.5957506895065308},{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.5181980729103088},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.4291022717952728},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4226565957069397},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4108853340148926},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35453084111213684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2080194056034088},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1743907630443573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10922408103942871},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C2779965526","wikidata":"https://www.wikidata.org/wiki/Q308841","display_name":"Snail","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkr879","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr879","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D479/9482208/gkr879.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22021380","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22021380","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:repositori.upf.edu:10230/23345","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/23345","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245141","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245141","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.960.2154","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.960.2154","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2011/10/22/nar.gkr879.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.973.1544","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.973.1544","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://repositori.upf.edu/bitstream/handle/10230/23345/Oliva_nuc_caps.pdf%3Bjsessionid%3D1ABF32C63DCDB665937F35AC7615BDDA?sequence%3D1","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.979.5453","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.979.5453","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/40/D1/D479.full.pdf","raw_type":"text"},{"id":"pmh:oai:aber.ac.uk:publications/666643a6-1d51-4d9e-bbed-9d0ba8c0c39f","is_oa":false,"landing_page_url":"http://hdl.handle.net/2160/10864","pdf_url":null,"source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D479","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D479","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr879","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr879","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D479/9482208/gkr879.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1831311507","display_name":null,"funder_award_id":"BIO2011-22568","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320320240","display_name":"Research Councils UK","ror":"https://ror.org/00dq2kk65"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2135047445.pdf","grobid_xml":"https://content.openalex.org/works/W2135047445.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1508596864","https://openalex.org/W1518724023","https://openalex.org/W1910818452","https://openalex.org/W1966567884","https://openalex.org/W1970999032","https://openalex.org/W1976434141","https://openalex.org/W1978571116","https://openalex.org/W1998757388","https://openalex.org/W2003822472","https://openalex.org/W2008708467","https://openalex.org/W2020406284","https://openalex.org/W2023359609","https://openalex.org/W2032643862","https://openalex.org/W2032930889","https://openalex.org/W2047544230","https://openalex.org/W2051340061","https://openalex.org/W2055043387","https://openalex.org/W2056770911","https://openalex.org/W2060791849","https://openalex.org/W2079011864","https://openalex.org/W2080022084","https://openalex.org/W2080686432","https://openalex.org/W2081359387","https://openalex.org/W2092036496","https://openalex.org/W2092550817","https://openalex.org/W2106648157","https://openalex.org/W2138854816","https://openalex.org/W2145828397","https://openalex.org/W2151550848","https://openalex.org/W2153153865","https://openalex.org/W2612166593","https://openalex.org/W3047703793","https://openalex.org/W4236236547","https://openalex.org/W4319290834"],"related_works":["https://openalex.org/W2607853144","https://openalex.org/W2023277005","https://openalex.org/W2049265322","https://openalex.org/W1799298765","https://openalex.org/W1020920971","https://openalex.org/W2777175617","https://openalex.org/W1986199568","https://openalex.org/W2126257927","https://openalex.org/W79932770","https://openalex.org/W2153819507"],"abstract_inverted_index":{"The":[0,75,110,137],"regions":[1],"of":[2,30,42,66,68,71,87,112,116,122],"the":[3,35,53,81,84,97],"polypeptide":[4],"chain":[5],"immediately":[6],"preceding":[7],"or":[8],"following":[9],"an":[10],"\u03b1-helix":[11],"are":[12,59],"known":[13],"as":[14,128],"Nt-":[15],"and":[16,37,83,103,131,135],"Ct":[17],"cappings,":[18],"respectively.":[19],"Cappings":[20],"play":[21],"a":[22,64,92,119],"central":[23],"role":[24],"stabilizing":[25],"\u03b1-helices":[26],"due":[27],"to":[28,57,99,108,118],"lack":[29],"intrahelical":[31],"hydrogen":[32],"bonds":[33],"in":[34,80],"first":[36],"last":[38],"turn.":[39],"Sequence":[40],"patterns":[41,70],"amino":[43],"acid":[44],"type":[45],"preferences":[46],"have":[47],"been":[48],"derived":[49],"for":[50],"cappings":[51],"but":[52],"structural":[54,69,105,133],"motifs":[55],"associated":[56,107],"them":[58],"still":[60],"unclassified.":[61],"CAPS-DB":[62,90,113],"is":[63,78,91,139],"database":[65,94,138],"clusters":[67],"different":[72,125],"capping":[73],"types.":[74],"clustering":[76],"algorithm":[77],"based":[79],"geometry":[82],"(\u03a6-\u03c8)-space":[85],"conformation":[86],"these":[88],"regions.":[89],"relational":[93],"that":[95],"allows":[96],"user":[98],"search,":[100],"browse,":[101],"inspect":[102],"retrieve":[104],"data":[106],"cappings.":[109],"contents":[111],"might":[114],"be":[115],"interest":[117],"wide":[120],"range":[121],"scientist":[123],"covering":[124],"areas":[126],"such":[127],"protein":[129],"design":[130],"engineering,":[132],"biology":[134],"bioinformatics.":[136],"accessible":[140],"at:":[141],"http://www.bioinsilico.org/CAPSDB.":[142]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
