{"id":"https://openalex.org/W1976957023","doi":"https://doi.org/10.1093/nar/gkr878","title":"mirEX: a platform for comparative exploration of plant pri-miRNA expression data","display_name":"mirEX: a platform for comparative exploration of plant pri-miRNA expression data","publication_year":2011,"publication_date":"2011-10-19","ids":{"openalex":"https://openalex.org/W1976957023","doi":"https://doi.org/10.1093/nar/gkr878","mag":"1976957023","pmid":"https://pubmed.ncbi.nlm.nih.gov/22013167"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr878","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr878","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D191/16956500/gkr878.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D191/16956500/gkr878.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029943803","display_name":"Dawid Bielewicz","orcid":"https://orcid.org/0000-0003-0488-7545"},"institutions":[{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Dawid Bielewicz","raw_affiliation_strings":["Department of Gene Expression, Faculty of Biology, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gene Expression, Faculty of Biology, Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050554951","display_name":"Jakub Dolata","orcid":"https://orcid.org/0000-0001-6141-8863"},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I4210144282","display_name":"Plant Gene Expression Center","ror":"https://ror.org/03rafms67","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210144282","https://openalex.org/I95457486"]},{"id":"https://openalex.org/I4210165307","display_name":"Expression G\u00e9n\u00e9tique Microbienne","ror":"https://ror.org/05t5n2z26","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210096427","https://openalex.org/I4210165307"]},{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["FR","PL","US"],"is_corresponding":false,"raw_author_name":"Jakub Dolata","raw_affiliation_strings":["Department of Gene Expression and","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gene Expression and","institution_ids":["https://openalex.org/I4210144282","https://openalex.org/I4210165307","https://openalex.org/I4210099679"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052786144","display_name":"Andrzej Zielezi\u0144ski","orcid":"https://orcid.org/0000-0002-8096-3776"},"institutions":[{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Andrzej Zielezinski","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069280602","display_name":"Sylwia Alaba","orcid":null},"institutions":[{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Sylwia Alaba","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082802404","display_name":"Bogna Szarzy\u0144ska","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I4210144282","display_name":"Plant Gene Expression Center","ror":"https://ror.org/03rafms67","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210144282","https://openalex.org/I95457486"]},{"id":"https://openalex.org/I4210165307","display_name":"Expression G\u00e9n\u00e9tique Microbienne","ror":"https://ror.org/05t5n2z26","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210096427","https://openalex.org/I4210165307"]},{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["FR","PL","US"],"is_corresponding":false,"raw_author_name":"Bogna Szarzynska","raw_affiliation_strings":["Department of Gene Expression and","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gene Expression and","institution_ids":["https://openalex.org/I4210144282","https://openalex.org/I4210165307","https://openalex.org/I4210099679"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000441831","display_name":"Micha\u0142 Wojciech Szcze\u015bniak","orcid":"https://orcid.org/0000-0002-6050-9525"},"institutions":[{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Michal W. Szczesniak","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004713346","display_name":"Artur Jarmo\u0142owski","orcid":"https://orcid.org/0000-0002-1073-146X"},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I4210144282","display_name":"Plant Gene Expression Center","ror":"https://ror.org/03rafms67","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210144282","https://openalex.org/I95457486"]},{"id":"https://openalex.org/I4210165307","display_name":"Expression G\u00e9n\u00e9tique Microbienne","ror":"https://ror.org/05t5n2z26","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210096427","https://openalex.org/I4210165307"]},{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["FR","PL","US"],"is_corresponding":false,"raw_author_name":"Artur Jarmolowski","raw_affiliation_strings":["Department of Gene Expression and","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gene Expression and","institution_ids":["https://openalex.org/I4210144282","https://openalex.org/I4210165307","https://openalex.org/I4210099679"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064852003","display_name":"Zofia Szweykowska-Kuli\u0144ska","orcid":"https://orcid.org/0000-0003-0032-469X"},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I4210144282","display_name":"Plant Gene Expression Center","ror":"https://ror.org/03rafms67","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889","https://openalex.org/I4210144282","https://openalex.org/I95457486"]},{"id":"https://openalex.org/I4210165307","display_name":"Expression G\u00e9n\u00e9tique Microbienne","ror":"https://ror.org/05t5n2z26","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210096427","https://openalex.org/I4210165307"]},{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["FR","PL","US"],"is_corresponding":false,"raw_author_name":"Zofia Szweykowska-Kulinska","raw_affiliation_strings":["Department of Gene Expression and","Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gene Expression and","institution_ids":["https://openalex.org/I4210144282","https://openalex.org/I4210165307","https://openalex.org/I4210099679"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048575461","display_name":"Wojciech M. Kar\u0142owski","orcid":"https://orcid.org/0000-0002-8086-5404"},"institutions":[{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wojciech M. Karlowski","raw_affiliation_strings":["Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]},{"raw_affiliation_string":"Department of Gene Expression and 2Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.0905,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.92981423,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D191","last_page":"D197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9431147575378418},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6239297389984131},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5539070963859558},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4452826678752899},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35797664523124695},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16387176513671875}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9431147575378418},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6239297389984131},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5539070963859558},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4452826678752899},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35797664523124695},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16387176513671875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr878","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr878","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D191/16956500/gkr878.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22013167","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22013167","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D191","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D191","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245179","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245179","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr878","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr878","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D191/16956500/gkr878.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1976957023.pdf","grobid_xml":"https://content.openalex.org/works/W1976957023.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1539889048","https://openalex.org/W1995016303","https://openalex.org/W2011518477","https://openalex.org/W2017426710","https://openalex.org/W2027604968","https://openalex.org/W2030489111","https://openalex.org/W2043686232","https://openalex.org/W2044131517","https://openalex.org/W2044832480","https://openalex.org/W2066266579","https://openalex.org/W2076020625","https://openalex.org/W2080018357","https://openalex.org/W2086491289","https://openalex.org/W2092427392","https://openalex.org/W2117876310","https://openalex.org/W2121412124","https://openalex.org/W2122431846","https://openalex.org/W2122640833","https://openalex.org/W2135084242","https://openalex.org/W2136767988","https://openalex.org/W2140500646","https://openalex.org/W2149639534","https://openalex.org/W2161654013","https://openalex.org/W2162965868","https://openalex.org/W4212941976","https://openalex.org/W4235291240"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W1641042124"],"abstract_inverted_index":{"mirEX":[0,42,65,85,136,149],"is":[1],"a":[2,20,44,68,140],"comprehensive":[3],"platform":[4],"for":[5,53,143],"comparative":[6],"analysis":[7],"of":[8,36,71,92,107,127,133],"primary":[9],"microRNA":[10,76,145],"expression":[11,15,39,72,90],"data.":[12],"RT-qPCR-based":[13],"gene":[14,38],"profiles":[16],"are":[17],"stored":[18],"in":[19,41,78,97,130],"universal":[21],"and":[22,26,50,81,104,124],"expandable":[23],"database":[24],"scheme":[25],"wrapped":[27],"by":[28,111],"an":[29],"intuitive":[30],"user-friendly":[31],"interface.":[32],"A":[33,147],"new":[34],"way":[35],"accessing":[37],"data":[40,54,129],"includes":[43],"simple":[45],"mouse":[46],"operated":[47],"querying":[48],"system":[49],"dynamic":[51],"graphs":[52],"mining":[55],"analyses.":[56],"In":[57],"contrast":[58],"to":[59],"other":[60],"publicly":[61,116],"available":[62,117],"databases,":[63],"the":[64,89,131],"interface":[66,150],"allows":[67],"simultaneous":[69],"comparison":[70],"levels":[73],"between":[74],"various":[75,105],"genes":[77],"diverse":[79],"organs":[80,106],"developmental":[82,100],"stages.":[83],"Currently,":[84],"integrates":[86],"information":[87],"about":[88],"profile":[91],"190":[93],"Arabidopsis":[94,144],"thaliana":[95],"pri-miRNAs":[96],"seven":[98],"different":[99],"stages:":[101],"seeds,":[102],"seedlings":[103],"mature":[108],"plants.":[109],"Additionally,":[110],"providing":[112],"RNA":[113],"structural":[114],"models,":[115],"deep":[118],"sequencing":[119],"results,":[120],"experimental":[121],"procedure":[122],"details":[123],"careful":[125],"selection":[126],"auxiliary":[128],"form":[132],"web":[134],"links,":[135],"can":[137,151],"function":[138],"as":[139],"one-stop":[141],"solution":[142],"information.":[146],"web-based":[148],"be":[152],"accessed":[153],"at":[154],"http://bioinfo.amu.edu.pl/mirex.":[155]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
