{"id":"https://openalex.org/W2024503898","doi":"https://doi.org/10.1093/nar/gkr441","title":"FFAS server: novel features and applications","display_name":"FFAS server: novel features and applications","publication_year":2011,"publication_date":"2011-06-29","ids":{"openalex":"https://openalex.org/W2024503898","doi":"https://doi.org/10.1093/nar/gkr441","mag":"2024503898","pmid":"https://pubmed.ncbi.nlm.nih.gov/21715387"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr441","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr441","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkr441","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066090493","display_name":"Lukasz Jaroszewski","orcid":null},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Jaroszewski","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055390474","display_name":"Z. Li","orcid":null},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z. Li","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I2799424032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101927292","display_name":"Xiaohui Cai","orcid":"https://orcid.org/0000-0001-6343-1017"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"X.-h. Cai","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I2799424032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009163035","display_name":"Christoph Weber","orcid":null},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Weber","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I2799424032"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010671148","display_name":"Adam Godzik","orcid":"https://orcid.org/0000-0002-2425-852X"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2799424032","display_name":"Discovery Institute","ror":"https://ror.org/05t8s3y29","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799424032"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. Godzik","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N. Torrey Pines Road, La Jolla, CA 92037 and 2 Center for Research in Biological Systems, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093 0446, USA","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Sanford Burnham Prebys Medical Discovery Institute, La Jolla, United States","institution_ids":["https://openalex.org/I188891513","https://openalex.org/I2799424032"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010671148"],"corresponding_institution_ids":["https://openalex.org/I188891513","https://openalex.org/I2799424032","https://openalex.org/I36258959"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":8.1523,"has_fulltext":false,"cited_by_count":182,"citation_normalized_percentile":{"value":0.98490352,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"39","issue":"suppl","first_page":"W38","last_page":"W44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.7110005617141724},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.6137826442718506},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5932024717330933},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5028080940246582},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.47997522354125977},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.45432817935943604},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.424834668636322},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41266098618507385},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.360698401927948},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33692631125450134},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3010786175727844},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.27108943462371826},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16784486174583435},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14168360829353333}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.7110005617141724},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.6137826442718506},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5932024717330933},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5028080940246582},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.47997522354125977},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.45432817935943604},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.424834668636322},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41266098618507385},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.360698401927948},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33692631125450134},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3010786175727844},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.27108943462371826},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16784486174583435},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14168360829353333}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkr441","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr441","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21715387","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21715387","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:ark:/13030/qt1d74m1jh","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1d74m1jh","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1d74m1jh","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 39, iss Web Server issue","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3125803","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125803","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr441","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr441","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6080761528","display_name":null,"funder_award_id":"GM087218","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1501210482","https://openalex.org/W1513332069","https://openalex.org/W1791999417","https://openalex.org/W1869516088","https://openalex.org/W1965186869","https://openalex.org/W2003852785","https://openalex.org/W2012924461","https://openalex.org/W2018053002","https://openalex.org/W2036792999","https://openalex.org/W2060259273","https://openalex.org/W2067620347","https://openalex.org/W2069529679","https://openalex.org/W2079093876","https://openalex.org/W2081359386","https://openalex.org/W2082667898","https://openalex.org/W2089085945","https://openalex.org/W2091232725","https://openalex.org/W2098621809","https://openalex.org/W2099667027","https://openalex.org/W2100059462","https://openalex.org/W2106648157","https://openalex.org/W2109806386","https://openalex.org/W2116977569","https://openalex.org/W2120251063","https://openalex.org/W2125826054","https://openalex.org/W2127415562","https://openalex.org/W2128653811","https://openalex.org/W2139271731","https://openalex.org/W2141885858","https://openalex.org/W2147667050","https://openalex.org/W2152966133","https://openalex.org/W2155606054","https://openalex.org/W2155792813","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2160769697","https://openalex.org/W2160865839","https://openalex.org/W2161746138","https://openalex.org/W2165028035","https://openalex.org/W4210623056"],"related_works":["https://openalex.org/W2598672065","https://openalex.org/W3120610872","https://openalex.org/W1638297612","https://openalex.org/W2523911541","https://openalex.org/W2037896692","https://openalex.org/W2136066520","https://openalex.org/W2036521446","https://openalex.org/W2926533301","https://openalex.org/W2354598492","https://openalex.org/W2066737015"],"abstract_inverted_index":{"The":[0,78,96,171,188],"Fold":[1],"and":[2,64,73,121,145,163,203,212],"Function":[3],"Assignment":[4],"System":[5],"(FFAS)":[6],"server":[7,14,70,173],"[Jaroszewski":[8],"et":[9,35],"al.":[10,36],"(2005)":[11],"FFAS03:":[12],"a":[13,51,99,122,133,152],"for":[15,27,43,177,215,221],"profile-profile":[16,29],"sequence":[17,40,47,79,84],"alignments.":[18],"Nucleic":[19],"Acids":[20],"Research,":[21],"33,":[22],"W284-W288]":[23],"implements":[24],"the":[25,54,69,138,166,216,224],"algorithm":[26],"protein":[28,101],"alignment":[30,161],"introduced":[31],"originally":[32],"in":[33,118,206],"[Rychlewski":[34],"(2000)":[37],"Comparison":[38],"of":[39,53,91,98,124,135,168,186],"profiles.":[41],"Strategies":[42],"structural":[44,169],"predictions":[45],"using":[46],"information.":[48],"Protein":[49,55],"Science:":[50],"Publication":[52],"Society,":[56],"9,":[57],"232-241].":[58],"Here,":[59],"we":[60],"present":[61],"updates,":[62],"changes":[63],"novel":[65,148],"functionality":[66],"added":[67],"to":[68,82,140,165,201],"since":[71],"2005":[72],"discuss":[74],"its":[75],"new":[76],"applications.":[77],"database":[80,123,167],"used":[81],"calculate":[83],"profiles":[85],"was":[86,174],"enriched":[87],"by":[88,183],"adding":[89],"sets":[90],"publicly":[92],"available":[93,220],"metagenomic":[94],"sequences.":[95],"profile":[97,109],"user's":[100],"can":[102],"now":[103],"be":[104],"compared":[105],"with":[106],"\u223c20":[107],"additional":[108],"databases,":[110],"including":[111],"several":[112],"complete":[113],"proteomes,":[114],"human":[115],"proteins":[116],"involved":[117],"genetic":[119],"diseases":[120],"microbial":[125],"virulence":[126],"factors.":[127],"A":[128],"newly":[129],"developed":[130],"interface":[131],"uses":[132],"system":[134],"tabs,":[136],"allowing":[137],"user":[139],"navigate":[141],"multiple":[142],"results":[143,205],"pages,":[144],"also":[146,175],"includes":[147],"functionality,":[149],"such":[150],"as":[151],"dotplot":[153],"graph":[154],"viewer,":[155],"modeling":[156],"tools,":[157],"an":[158,184,199],"improved":[159],"3D":[160],"viewer":[162],"links":[164],"similarities.":[170],"FFAS":[172,189,217,225],"optimized":[176],"speed:":[178],"running":[179],"times":[180],"were":[181],"reduced":[182],"order":[185],"magnitude.":[187],"server,":[190],"http://ffas.godziklab.org,":[191],"has":[192],"no":[193],"log-in":[194],"requirement,":[195],"albeit":[196],"there":[197],"is":[198],"option":[200],"register":[202],"store":[204],"individual,":[207],"password-protected":[208],"directories.":[209],"Source":[210],"code":[211],"Linux":[213],"executables":[214],"program":[218],"are":[219],"download":[222],"from":[223],"server.":[226]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":25},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":24},{"year":2013,"cited_by_count":24},{"year":2012,"cited_by_count":14}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
