{"id":"https://openalex.org/W2143094533","doi":"https://doi.org/10.1093/nar/gkr431","title":"Rosetta FlexPepDock web server\u2014high resolution modeling of peptide\u2013protein interactions","display_name":"Rosetta FlexPepDock web server\u2014high resolution modeling of peptide\u2013protein interactions","publication_year":2011,"publication_date":"2011-05-27","ids":{"openalex":"https://openalex.org/W2143094533","doi":"https://doi.org/10.1093/nar/gkr431","mag":"2143094533","pmid":"https://pubmed.ncbi.nlm.nih.gov/21622962"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr431","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr431","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W249/18784390/gkr431.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W249/18784390/gkr431.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044428734","display_name":"Nir London","orcid":"https://orcid.org/0000-0003-2687-0699"},"institutions":[{"id":"https://openalex.org/I2799899409","display_name":"Hadassah Medical Center","ror":"https://ror.org/01cqmqj90","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I2799899409"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Nir London","raw_affiliation_strings":["Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem 91120, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem 91120, Israel","institution_ids":["https://openalex.org/I2799899409","https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007097283","display_name":"Barak Raveh","orcid":"https://orcid.org/0000-0002-2073-3936"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Barak Raveh","raw_affiliation_strings":["Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem 91120,","The Blavatnik School of Computer Science, Tel-Aviv University, Ramat Aviv 69978, Israel and","Hebrew University of Jerusalem, Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem 91120,","institution_ids":[]},{"raw_affiliation_string":"The Blavatnik School of Computer Science, Tel-Aviv University, Ramat Aviv 69978, Israel and","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Hebrew University of Jerusalem, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070082082","display_name":"Eyal Cohen","orcid":"https://orcid.org/0000-0003-0457-9200"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eyal Cohen","raw_affiliation_strings":["Undergraduate Program of the School of Computer Science and Engineering, The Hebrew University, 91904 Jerusalem, Israel","Hebrew University of Jerusalem, Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"Undergraduate Program of the School of Computer Science and Engineering, The Hebrew University, 91904 Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Hebrew University of Jerusalem, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044530098","display_name":"Guy Fathi","orcid":null},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Guy Fathi","raw_affiliation_strings":["Undergraduate Program of the School of Computer Science and Engineering, The Hebrew University, 91904 Jerusalem, Israel","Hebrew University of Jerusalem, Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"Undergraduate Program of the School of Computer Science and Engineering, The Hebrew University, 91904 Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Hebrew University of Jerusalem, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034150494","display_name":"Ora Schueler\u2010Furman","orcid":"https://orcid.org/0000-0002-1624-0362"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ora Schueler-Furman","raw_affiliation_strings":["Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem 91120,","Hebrew University of Jerusalem, Jerusalem, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, Institute for Medical Research Israel-Canada, Hadassah Medical School, The Hebrew University, Jerusalem 91120,","institution_ids":[]},{"raw_affiliation_string":"Hebrew University of Jerusalem, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044428734"],"corresponding_institution_ids":["https://openalex.org/I197251160","https://openalex.org/I2799899409"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.8711,"has_fulltext":true,"cited_by_count":407,"citation_normalized_percentile":{"value":0.98294396,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"39","issue":"suppl_2","first_page":"W249","last_page":"W253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.8451211452484131},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7802196145057678},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5764991044998169},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.538622260093689},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.538030207157135},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.4733025133609772},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.4561431407928467},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4341316521167755},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.41895899176597595},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.41469353437423706},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40320032835006714},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35163670778274536},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.23627468943595886},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1945236623287201},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16924479603767395},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07398045063018799}],"concepts":[{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.8451211452484131},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7802196145057678},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5764991044998169},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.538622260093689},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.538030207157135},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4733025133609772},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.4561431407928467},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4341316521167755},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.41895899176597595},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.41469353437423706},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40320032835006714},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35163670778274536},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.23627468943595886},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1945236623287201},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16924479603767395},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07398045063018799},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkr431","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr431","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W249/18784390/gkr431.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21622962","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21622962","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125795","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125795","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr431","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr431","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W249/18784390/gkr431.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321950","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143094533.pdf","grobid_xml":"https://content.openalex.org/works/W2143094533.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1964958542","https://openalex.org/W1972043325","https://openalex.org/W1979629343","https://openalex.org/W1983142511","https://openalex.org/W1988594478","https://openalex.org/W1988739180","https://openalex.org/W1996681913","https://openalex.org/W2009297402","https://openalex.org/W2019691413","https://openalex.org/W2023272942","https://openalex.org/W2027403155","https://openalex.org/W2041449172","https://openalex.org/W2052033556","https://openalex.org/W2053538195","https://openalex.org/W2054954101","https://openalex.org/W2056219928","https://openalex.org/W2057975573","https://openalex.org/W2059942519","https://openalex.org/W2076058809","https://openalex.org/W2077776336","https://openalex.org/W2083747978","https://openalex.org/W2094842122","https://openalex.org/W2096994057","https://openalex.org/W2098451503","https://openalex.org/W2106661192","https://openalex.org/W2109604654","https://openalex.org/W2115133023","https://openalex.org/W2116890528","https://openalex.org/W2124074156","https://openalex.org/W2130479394","https://openalex.org/W2134059200","https://openalex.org/W2134731229","https://openalex.org/W2145080853","https://openalex.org/W2146134187","https://openalex.org/W2151460035","https://openalex.org/W2153594105","https://openalex.org/W2163881579","https://openalex.org/W2167300514"],"related_works":["https://openalex.org/W2131900949","https://openalex.org/W2140522686","https://openalex.org/W3158075195","https://openalex.org/W3138089182","https://openalex.org/W1974422922","https://openalex.org/W3187431608","https://openalex.org/W4309353019","https://openalex.org/W2914490533","https://openalex.org/W2145118195","https://openalex.org/W2107326055"],"abstract_inverted_index":{"Peptide-protein":[0],"interactions":[1,9,19],"are":[2,136],"among":[3],"the":[4,11,41,48,63,66,70,74,83,125],"most":[5],"prevalent":[6],"and":[7,56,86,96,106,138,147],"important":[8],"in":[10],"cell,":[12],"but":[13],"a":[14,34,52,99],"large":[15],"fraction":[16],"of":[17,43,62,102,162],"those":[18],"lack":[20],"detailed":[21],"structural":[22],"characterization.":[23],"The":[24],"Rosetta":[25,49],"FlexPepDock":[26,71,128],"web":[27,149],"server":[28,72,150],"(http://flexpepdock.furmanlab.cs.huji.ac.il/)":[29],"provides":[30],"an":[31,57],"interface":[32,151],"to":[33,76,82,87,112,132,145,155],"high-resolution":[35],"peptide":[36,64,75,84,113],"docking":[37],"(refinement)":[38],"protocol":[39,92],"for":[40],"modeling":[42],"peptide-protein":[44,104,141,160],"complexes,":[45,105],"implemented":[46],"within":[47,65,116],"framework.":[50],"Given":[51],"protein":[53],"receptor":[54,67],"structure":[55],"approximate,":[58],"possibly":[59],"inaccurate":[60],"model":[61,157],"binding":[68],"site,":[69],"refines":[73],"high":[77],"resolution,":[78],"allowing":[79],"full":[80],"flexibility":[81],"backbone":[85,119],"all":[88],"side":[89],"chains.":[90],"This":[91,143],"was":[93,107],"extensively":[94],"tested":[95],"benchmarked":[97],"on":[98],"wide":[100],"array":[101],"non-redundant":[103],"proven":[108],"effective":[109],"when":[110],"applied":[111,131],"starting":[114],"conformations":[115],"5.5":[117],"\u00c5":[118],"root":[120],"mean":[121],"square":[122],"deviation":[123],"from":[124],"native":[126],"conformation.":[127],"has":[129],"been":[130],"several":[133],"systems":[134],"that":[135],"mediated":[137],"regulated":[139],"by":[140],"interactions.":[142],"easy":[144],"use":[146],"general":[148],"allows":[152],"non-expert":[153],"users":[154],"accurately":[156],"their":[158],"specific":[159],"interaction":[161],"interest.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":34},{"year":2021,"cited_by_count":48},{"year":2020,"cited_by_count":38},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":28},{"year":2017,"cited_by_count":32},{"year":2016,"cited_by_count":34},{"year":2015,"cited_by_count":27},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
