{"id":"https://openalex.org/W2109320260","doi":"https://doi.org/10.1093/nar/gkr408","title":"Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing","display_name":"Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing","publication_year":2011,"publication_date":"2011-06-06","ids":{"openalex":"https://openalex.org/W2109320260","doi":"https://doi.org/10.1093/nar/gkr408","mag":"2109320260","pmid":"https://pubmed.ncbi.nlm.nih.gov/21646336"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr408","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr408","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W470/7629494/gkr408.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W470/7629494/gkr408.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011836507","display_name":"Rub\u00e9n S\u00e1nchez","orcid":"https://orcid.org/0000-0003-4589-1647"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"R. Sanchez","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler, 16-3, 46013 Valencia, Spain","Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler, 16-3, 46013 Valencia, Spain","institution_ids":[]},{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084274556","display_name":"Fran\u00e7ois Serra","orcid":"https://orcid.org/0000-0003-3895-4742"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Serra","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005495520","display_name":"Joaqu\u00edn T\u00e1rraga","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Tarraga","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068938981","display_name":"Ignacio Medina","orcid":"https://orcid.org/0000-0003-0095-670X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Medina","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066796940","display_name":"Jos\u00e9 Carbonell\u2010Caballero","orcid":"https://orcid.org/0000-0002-9170-0533"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Carbonell","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079095491","display_name":"L. Pulido","orcid":"https://orcid.org/0009-0004-7069-9088"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L. Pulido","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010479419","display_name":"Andrea De Maria","orcid":"https://orcid.org/0000-0001-5782-333X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. de Maria","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059757648","display_name":"Salvador Capella-Guti\u00e9rrez","orcid":"https://orcid.org/0000-0002-0309-604X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"S. Capella-Gutierrez","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050318013","display_name":"Jaime Huerta\u2010Cepas","orcid":"https://orcid.org/0000-0003-4195-5025"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Huerta-Cepas","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003394700","display_name":"Toni Gabald\u00f3n","orcid":"https://orcid.org/0000-0003-0019-1735"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"T. Gabaldon","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Dopazo","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087451958","display_name":"Hern\u00e1n Dopazo","orcid":"https://orcid.org/0000-0001-6125-2357"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"H. Dopazo","raw_affiliation_strings":["Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), 2 Functional Genomics Lab Bioinformatics and Genomics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Autopista del Saler, 16-3, 46013 Valencia and 3 Comparative Genomics Group, Bioinformatics & Genomics Programme Centre for Genomic Regulation (CRG), UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210165109","https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5011836507"],"corresponding_institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I4210165109"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.7728,"has_fulltext":true,"cited_by_count":241,"citation_normalized_percentile":{"value":0.97761821,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"39","issue":"suppl","first_page":"W470","last_page":"W474"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9584000110626221,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenomics","display_name":"Phylogenomics","score":0.9628931283950806},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7446490526199341},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.6617034673690796},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6431167721748352},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5754233002662659},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48555895686149597},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.47017115354537964},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4288443624973297},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.422165185213089},{"id":"https://openalex.org/keywords/molecular-phylogenetics","display_name":"Molecular phylogenetics","score":0.4162290394306183},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.39069855213165283},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.336745023727417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3367326557636261},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3340308666229248},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.2830599546432495},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2552131116390228},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22707659006118774},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12399893999099731},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11723661422729492}],"concepts":[{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.9628931283950806},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7446490526199341},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.6617034673690796},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6431167721748352},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5754233002662659},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48555895686149597},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.47017115354537964},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4288443624973297},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.422165185213089},{"id":"https://openalex.org/C195239911","wikidata":"https://www.wikidata.org/wiki/Q2007033","display_name":"Molecular phylogenetics","level":4,"score":0.4162290394306183},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39069855213165283},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.336745023727417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3367326557636261},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3340308666229248},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.2830599546432495},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2552131116390228},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22707659006118774},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12399893999099731},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11723661422729492},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkr408","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr408","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W470/7629494/gkr408.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21646336","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21646336","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125789","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125789","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr408","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr408","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W470/7629494/gkr408.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109320260.pdf","grobid_xml":"https://content.openalex.org/works/W2109320260.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1993038297","https://openalex.org/W2004798786","https://openalex.org/W2065461553","https://openalex.org/W2068117230","https://openalex.org/W2095319152","https://openalex.org/W2098448352","https://openalex.org/W2103546861","https://openalex.org/W2106882534","https://openalex.org/W2110335151","https://openalex.org/W2115011276","https://openalex.org/W2115888213","https://openalex.org/W2119326915","https://openalex.org/W2120611093","https://openalex.org/W2125778420","https://openalex.org/W2132926880","https://openalex.org/W2138178197","https://openalex.org/W2142635246","https://openalex.org/W2144654387","https://openalex.org/W2146058063","https://openalex.org/W2155237411","https://openalex.org/W2170996473","https://openalex.org/W2259225862","https://openalex.org/W3149745985","https://openalex.org/W3199943451"],"related_works":["https://openalex.org/W2380915035","https://openalex.org/W2298047311","https://openalex.org/W4242909373","https://openalex.org/W4231704780","https://openalex.org/W1997697005","https://openalex.org/W2308248996","https://openalex.org/W2428423162","https://openalex.org/W1511772879","https://openalex.org/W4309995531","https://openalex.org/W4213366404"],"abstract_inverted_index":{"Phylemon":[0,40,104],"2.0":[1,41,105],"is":[2],"a":[3,25,107],"new":[4],"release":[5],"of":[6,9,31,70,109],"the":[7,28,79,82],"suite":[8,108],"web":[10,52,83],"tools":[11,111],"for":[12,35],"molecular":[13,32],"evolution,":[14],"phylogenetics,":[15],"phylogenomics":[16],"and":[17,37,68,85,92,116,121,123],"hypotheses":[18,125],"testing.":[19,126],"It":[20],"has":[21,42],"been":[22],"designed":[23],"as":[24],"response":[26],"to":[27,90,96],"increasing":[29],"demand":[30],"sequence":[33,113],"analyses":[34],"experts":[36],"non-expert":[38],"users.":[39],"several":[43],"unique":[44],"features":[45],"that":[46,60],"differentiates":[47],"it":[48,55,73,87],"from":[49],"other":[50],"similar":[51],"resources:":[53],"(i)":[54],"offers":[56],"an":[57],"integrated":[58],"environment":[59],"enables":[61],"evolutionary":[62,124],"analyses,":[63,76],"format":[64],"conversion,":[65],"file":[66],"storage":[67],"edition":[69],"results;":[71],"(ii)":[72],"suggests":[74],"further":[75],"thereby":[77],"guiding":[78],"users":[80,89],"through":[81],"server;":[84],"(iii)":[86],"allows":[88],"design":[91],"save":[93],"phylogenetic":[94],"pipelines":[95],"be":[97],"used":[98],"over":[99],"multiple":[100],"genes":[101],"(phylogenomics).":[102],"Altogether,":[103],"integrates":[106],"30":[110],"covering":[112],"alignment":[114],"reconstruction":[115],"trimming;":[117],"tree":[118],"reconstruction,":[119],"visualization":[120],"manipulation;":[122]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":23},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":12}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
