{"id":"https://openalex.org/W1975673380","doi":"https://doi.org/10.1093/nar/gkr357","title":"DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments","display_name":"DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments","publication_year":2011,"publication_date":"2011-05-27","ids":{"openalex":"https://openalex.org/W1975673380","doi":"https://doi.org/10.1093/nar/gkr357","mag":"1975673380","pmid":"https://pubmed.ncbi.nlm.nih.gov/21622957"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr357","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W112/18783620/gkr357.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W112/18783620/gkr357.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004907038","display_name":"Mario Fasold","orcid":"https://orcid.org/0000-0001-8299-4149"},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Mario Fasold","raw_affiliation_strings":["Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Germany","institution_ids":["https://openalex.org/I4210148697"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063034774","display_name":"David Langenberger","orcid":"https://orcid.org/0000-0001-9424-9701"},"institutions":[{"id":"https://openalex.org/I40900055","display_name":"Telstra (Australia)","ror":"https://ror.org/04g047260","country_code":"AU","type":"company","lineage":["https://openalex.org/I40900055"]},{"id":"https://openalex.org/I51923648","display_name":"Life University","ror":"https://ror.org/01c0k9408","country_code":"US","type":"education","lineage":["https://openalex.org/I51923648"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"David Langenberger","raw_affiliation_strings":["Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha rtelstrasse 16-18, 04107 Leipzig,","LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha rtelstrasse 16-18, 04107 Leipzig,","institution_ids":["https://openalex.org/I40900055"]},{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","institution_ids":["https://openalex.org/I51923648"]},{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045754538","display_name":"Hans Binder","orcid":"https://orcid.org/0000-0002-2242-4678"},"institutions":[{"id":"https://openalex.org/I40900055","display_name":"Telstra (Australia)","ror":"https://ror.org/04g047260","country_code":"AU","type":"company","lineage":["https://openalex.org/I40900055"]},{"id":"https://openalex.org/I51923648","display_name":"Life University","ror":"https://ror.org/01c0k9408","country_code":"US","type":"education","lineage":["https://openalex.org/I51923648"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Hans Binder","raw_affiliation_strings":["Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha rtelstrasse 16-18, 04107 Leipzig,","LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha rtelstrasse 16-18, 04107 Leipzig,","institution_ids":["https://openalex.org/I40900055"]},{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","institution_ids":["https://openalex.org/I51923648"]},{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I51923648","display_name":"Life University","ror":"https://ror.org/01c0k9408","country_code":"US","type":"education","lineage":["https://openalex.org/I51923648"]}],"countries":["AT","DE","DK","US"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","Center for non-coding RNA in Technology and Health, University of Copenhagen, Gr\u00f8nnega \u02dardsvej 3, 1870 Frederiksberg C, Denmark and","Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA","Department of Theoretical Chemistry, University of Vienna, Wa \u00a8hringer Stra\u00dfe 17, 1090 Wien, Austria,","Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,","RNomics Group, Fraunhofer Institute for Cell Therapy and Immunology, Perlickstrasse 1, 04103 Leipzig, Germany,","Max-Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 04103 Leipzig, Germany,"],"affiliations":[{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","institution_ids":["https://openalex.org/I51923648"]},{"raw_affiliation_string":"Center for non-coding RNA in Technology and Health, University of Copenhagen, Gr\u00f8nnega \u02dardsvej 3, 1870 Frederiksberg C, Denmark and","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Department of Theoretical Chemistry, University of Vienna, Wa \u00a8hringer Stra\u00dfe 17, 1090 Wien, Austria,","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,","institution_ids":[]},{"raw_affiliation_string":"RNomics Group, Fraunhofer Institute for Cell Therapy and Immunology, Perlickstrasse 1, 04103 Leipzig, Germany,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Max-Planck Institute for Mathematics in the Sciences, Inselstrasse 22, 04103 Leipzig, Germany,","institution_ids":["https://openalex.org/I4210091327"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070930800","display_name":"Steve Hoffmann","orcid":"https://orcid.org/0000-0002-5239-7201"},"institutions":[{"id":"https://openalex.org/I40900055","display_name":"Telstra (Australia)","ror":"https://ror.org/04g047260","country_code":"AU","type":"company","lineage":["https://openalex.org/I40900055"]},{"id":"https://openalex.org/I51923648","display_name":"Life University","ror":"https://ror.org/01c0k9408","country_code":"US","type":"education","lineage":["https://openalex.org/I51923648"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Steve Hoffmann","raw_affiliation_strings":["Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha rtelstrasse 16-18, 04107 Leipzig,","LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha rtelstrasse 16-18, 04107 Leipzig,","institution_ids":["https://openalex.org/I40900055"]},{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Philipp-Rosenthal-Strasse 27, 04107 Leipzig,","institution_ids":["https://openalex.org/I51923648"]},{"raw_affiliation_string":"Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Ha \u00a8rtelstrasse 16-18, 04107 Leipzig,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004907038"],"corresponding_institution_ids":["https://openalex.org/I4210148697"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.2399,"has_fulltext":true,"cited_by_count":98,"citation_normalized_percentile":{"value":0.91634022,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"39","issue":"suppl_2","first_page":"W112","last_page":"W117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8576582670211792},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6275906562805176},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.6181658506393433},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5783305168151855},{"id":"https://openalex.org/keywords/small-nucleolar-rna","display_name":"Small nucleolar RNA","score":0.5660194754600525},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.508705198764801},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.433349072933197},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2346476912498474},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19314411282539368}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8576582670211792},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6275906562805176},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.6181658506393433},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5783305168151855},{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.5660194754600525},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.508705198764801},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.433349072933197},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2346476912498474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19314411282539368},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkr357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr357","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W112/18783620/gkr357.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21622957","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21622957","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:info:fedora/oai:univie.ac.at:o:245695","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:245695","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1362-4954","raw_type":"article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.787.4145","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.787.4145","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/9c/1f/gkr357.PMC3125765.pdf","raw_type":"text"},{"id":"pmh:oai:edoc.mpg.de:587710","is_oa":false,"landing_page_url":"http://edoc.mpg.de/587710","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, v.39, W112-W117 (2011)","raw_type":"Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/226267","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/226267","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3125765","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125765","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr357","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W112/18783620/gkr357.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5374134968","display_name":null,"funder_award_id":"European Social Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320328735","display_name":"Freistaat Sachsen","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1975673380.pdf","grobid_xml":"https://content.openalex.org/works/W1975673380.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1587026990","https://openalex.org/W1996542013","https://openalex.org/W2016038592","https://openalex.org/W2033713984","https://openalex.org/W2036649644","https://openalex.org/W2070571588","https://openalex.org/W2075495563","https://openalex.org/W2078358187","https://openalex.org/W2089988218","https://openalex.org/W2095932050","https://openalex.org/W2098849734","https://openalex.org/W2100317431","https://openalex.org/W2100555999","https://openalex.org/W2106039274","https://openalex.org/W2109676825","https://openalex.org/W2112466127","https://openalex.org/W2119979880","https://openalex.org/W2121196786","https://openalex.org/W2123099342","https://openalex.org/W2131088968","https://openalex.org/W2133990480","https://openalex.org/W2135986967","https://openalex.org/W2138910750","https://openalex.org/W2140302584","https://openalex.org/W2142380702","https://openalex.org/W2145628933","https://openalex.org/W2147495091","https://openalex.org/W2148224382","https://openalex.org/W2151804955","https://openalex.org/W2153091158","https://openalex.org/W2154537006","https://openalex.org/W2154537630","https://openalex.org/W2164256634","https://openalex.org/W2582743722","https://openalex.org/W2911964244","https://openalex.org/W4230096730","https://openalex.org/W6682874003"],"related_works":["https://openalex.org/W2298517926","https://openalex.org/W2753580600","https://openalex.org/W2003086973","https://openalex.org/W2383534773","https://openalex.org/W2753767186","https://openalex.org/W4230804400","https://openalex.org/W4313827290","https://openalex.org/W2462321949","https://openalex.org/W4385385972","https://openalex.org/W4366318087"],"abstract_inverted_index":{"Small":[0],"non-coding":[1],"RNAs":[2],"(ncRNAs)":[3],"such":[4],"as":[5],"microRNAs,":[6],"snoRNAs":[7],"and":[8,96],"tRNAs":[9],"are":[10],"a":[11,46,53,66,83],"diverse":[12],"collection":[13],"of":[14,56,86,98],"molecules":[15],"with":[16],"several":[17],"important":[18],"biological":[19],"functions.":[20],"Current":[21],"methods":[22,50],"for":[23,26,49],"high-throughput":[24],"sequencing":[25],"the":[27,31,35],"first":[28],"time":[29],"offer":[30],"opportunity":[32],"to":[33,72],"investigate":[34],"entire":[36],"ncRNAome":[37],"in":[38],"an":[39],"essentially":[40],"unbiased":[41],"way.":[42],"However,":[43],"there":[44],"is":[45],"substantial":[47],"need":[48],"that":[51,70],"allow":[52],"convenient":[54],"analysis":[55,87],"these":[57],"overwhelmingly":[58],"large":[59],"data":[60,76],"sets.":[61],"Here,":[62],"we":[63],"present":[64],"DARIO,":[65],"free":[67],"web":[68,104],"service":[69],"allows":[71],"study":[73],"short":[74],"read":[75,92],"from":[77],"small":[78],"RNA-seq":[79],"experiments.":[80],"It":[81],"provides":[82],"wide":[84],"range":[85],"features,":[88],"including":[89],"quality":[90],"control,":[91],"normalization,":[93],"ncRNA":[94,100],"quantification":[95],"prediction":[97],"putative":[99],"candidates.":[101],"The":[102],"DARIO":[103],"site":[105],"can":[106],"be":[107],"accessed":[108],"at":[109],"http://dario.bioinf.uni-leipzig.de/.":[110]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}