{"id":"https://openalex.org/W2168377067","doi":"https://doi.org/10.1093/nar/gkr321","title":"SNPsyn: detection and exploration of SNP\u2013SNP interactions","display_name":"SNPsyn: detection and exploration of SNP\u2013SNP interactions","publication_year":2011,"publication_date":"2011-05-14","ids":{"openalex":"https://openalex.org/W2168377067","doi":"https://doi.org/10.1093/nar/gkr321","mag":"2168377067","pmid":"https://pubmed.ncbi.nlm.nih.gov/21576219"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr321","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr321","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W444/18783100/gkr321.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W444/18783100/gkr321.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070653907","display_name":"Toma\u017e Curk","orcid":"https://orcid.org/0000-0003-4888-7256"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Tomaz Curk","raw_affiliation_strings":["Faculty of Computer and Information Science, University of Ljubljana, Trzaska cesta 25, SI-1000 Ljubljana, Slovenia. tomaz.curk@fri.uni-lj.si"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer and Information Science, University of Ljubljana, Trzaska cesta 25, SI-1000 Ljubljana, Slovenia. tomaz.curk@fri.uni-lj.si","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044846726","display_name":"Gregor Rot","orcid":"https://orcid.org/0009-0001-7888-6687"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gregor Rot","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5073792028","display_name":"Bla\u017e Zupan","orcid":"https://orcid.org/0000-0002-5864-7056"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Blaz Zupan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6668,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.84952886,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"39","issue":"suppl_2","first_page":"W444","last_page":"W449"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6369346380233765},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.6046127676963806},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5990190505981445},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5559666752815247},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5501967072486877},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5477138161659241},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5423344969749451},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.5342117547988892},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42592746019363403},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4223952889442444},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3402286767959595},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.32346150279045105},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3230348825454712},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22651252150535583},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18044796586036682},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11610400676727295},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.0909639298915863}],"concepts":[{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6369346380233765},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.6046127676963806},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5990190505981445},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5559666752815247},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5501967072486877},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5477138161659241},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5423344969749451},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.5342117547988892},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42592746019363403},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4223952889442444},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3402286767959595},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.32346150279045105},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3230348825454712},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22651252150535583},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18044796586036682},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11610400676727295},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0909639298915863}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkr321","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr321","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W444/18783100/gkr321.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21576219","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21576219","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125755","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125755","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr321","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr321","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W444/18783100/gkr321.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1516560083","https://openalex.org/W1596515083","https://openalex.org/W1822695366","https://openalex.org/W1966619607","https://openalex.org/W1997744129","https://openalex.org/W2039279598","https://openalex.org/W2041170649","https://openalex.org/W2043879770","https://openalex.org/W2063575312","https://openalex.org/W2084974619","https://openalex.org/W2090713084","https://openalex.org/W2100850281","https://openalex.org/W2103017472","https://openalex.org/W2119279196","https://openalex.org/W2125858955","https://openalex.org/W2130410032","https://openalex.org/W2131878646","https://openalex.org/W2134783591","https://openalex.org/W2137089630","https://openalex.org/W2158620919","https://openalex.org/W2161630867","https://openalex.org/W2161633633","https://openalex.org/W2171777347","https://openalex.org/W2412256481","https://openalex.org/W2885727518","https://openalex.org/W3104824402","https://openalex.org/W4244107416","https://openalex.org/W6630707853"],"related_works":["https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2070581548","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W3016573916","https://openalex.org/W3157359833","https://openalex.org/W3024317680","https://openalex.org/W1511048503"],"abstract_inverted_index":{"SNPsyn":[0,41,95],"(http://snpsyn.biolab.si)":[1],"is":[2,32,42,56,75],"an":[3,35],"interactive":[4],"software":[5],"tool":[6],"for":[7],"the":[8,99,107,133],"discovery":[9],"of":[10,13,123],"synergistic":[11,121],"pairs":[12,122],"single":[14],"nucleotide":[15],"polymorphisms":[16],"(SNPs)":[17],"from":[18],"large":[19],"genome-wide":[20],"case-control":[21],"association":[22],"studies":[23],"(GWAS)":[24],"data":[25,104],"on":[26,65,119],"complex":[27],"diseases.":[28],"Synergy":[29],"among":[30],"SNPs":[31],"estimated":[33],"using":[34],"information-theoretic":[36],"approach":[37],"called":[38],"interaction":[39,108],"analysis.":[40],"both":[43],"a":[44,49,66,91],"stand-alone":[45,92],"C++/Flash":[46],"application":[47],"and":[48,60,82,110,130],"web":[50,87,96],"server.":[51],"The":[52,71,94,114],"computationally":[53],"intensive":[54],"part":[55],"implemented":[57],"in":[58,63,77,85],"C++":[59],"can":[61,83,116],"run":[62,84],"parallel":[64],"dedicated":[67],"cluster":[68],"or":[69,89],"grid.":[70],"graphical":[72],"user":[73,115],"interface":[74],"written":[76],"Adobe":[78],"Flash":[79,100],"Builder":[80],"4":[81],"most":[86],"browsers":[88],"as":[90],"application.":[93],"server":[97],"hosts":[98],"application,":[101],"receives":[102],"GWAS":[103],"submissions,":[105],"invokes":[106],"analysis":[109,129],"serves":[111],"result":[112],"files.":[113],"explore":[117],"details":[118],"identified":[120],"SNPs,":[124],"perform":[125],"gene":[126],"set":[127],"enrichment":[128],"interact":[131],"with":[132],"constructed":[134],"SNP":[135],"synergy":[136],"network.":[137]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
