{"id":"https://openalex.org/W2043009661","doi":"https://doi.org/10.1093/nar/gkr292","title":"BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences","display_name":"BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences","publication_year":2011,"publication_date":"2011-05-26","ids":{"openalex":"https://openalex.org/W2043009661","doi":"https://doi.org/10.1093/nar/gkr292","mag":"2043009661","pmid":"https://pubmed.ncbi.nlm.nih.gov/21622657"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr292","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr292","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W197/7624395/gkr292.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W197/7624395/gkr292.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"D. Piovesan","raw_affiliation_strings":["Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, Bologna, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044479288","display_name":"Pier Luigi Martelli","orcid":"https://orcid.org/0000-0002-0274-5669"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P. Luigi Martelli","raw_affiliation_strings":["Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060232841","display_name":"Piero Fariselli","orcid":"https://orcid.org/0000-0003-1811-4762"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P. Fariselli","raw_affiliation_strings":["Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065847479","display_name":"Andrea Zauli","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Zauli","raw_affiliation_strings":["Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079319034","display_name":"Ivan Rossi","orcid":"https://orcid.org/0000-0002-2077-7496"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"I. Rossi","raw_affiliation_strings":["Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053410790","display_name":"Rita Casadio","orcid":"https://orcid.org/0000-0002-7462-7039"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]},{"id":"https://openalex.org/I4210097606","display_name":"GNA University","ror":"https://ror.org/00cy7e479","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097606"]}],"countries":["IN","IT"],"is_corresponding":false,"raw_author_name":"R. Casadio","raw_affiliation_strings":["Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network,","Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network,","institution_ids":["https://openalex.org/I4210097606"]},{"raw_affiliation_string":"Department of Biology, Bologna Biocomputing Group, Bologna Computational Biology Network, 2 Department of Computer Science, University of Bologna, Bologna and 3 BioDec srl, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5000882827"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.9339,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.73516151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"39","issue":"suppl","first_page":"W197","last_page":"W202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9274215698242188},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8981561660766602},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49091988801956177},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4131351411342621},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27710986137390137},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08712062239646912}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9274215698242188},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8981561660766602},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49091988801956177},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4131351411342621},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27710986137390137},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08712062239646912},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkr292","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr292","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W197/7624395/gkr292.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21622657","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21622657","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125743","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125743","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:iris.unito.it:2318/1687581","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/1687581","pdf_url":"http://hdl.handle.net/2318/1687581","source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:cris.unibo.it:11585/107005","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/107005","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:cris.unibo.it:11585/394377","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/394377","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:www.research.unipd.it:11577/3183956","is_oa":true,"landing_page_url":"http://nar.oxfordjournals.org/content/39/suppl_2/W197.long","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr292","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr292","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W197/7624395/gkr292.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G61031155","display_name":null,"funder_award_id":"MIUR-FIRB","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320327843","display_name":"Istituto Nazionale di Fisica Nucleare","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2043009661.pdf","grobid_xml":"https://content.openalex.org/works/W2043009661.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1975879553","https://openalex.org/W2031901496","https://openalex.org/W2096039184","https://openalex.org/W2097874946","https://openalex.org/W2098770192","https://openalex.org/W2098913407","https://openalex.org/W2103148772","https://openalex.org/W2124166542","https://openalex.org/W2128549389","https://openalex.org/W2132926880","https://openalex.org/W2137488129","https://openalex.org/W2146827656","https://openalex.org/W2150948439","https://openalex.org/W2151370125","https://openalex.org/W2151831732","https://openalex.org/W2165347905","https://openalex.org/W2171097261"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802"],"abstract_inverted_index":{"We":[0],"introduce":[1],"BAR-PLUS":[2],"(BAR(+)),":[3],"a":[4,19,25,31,35,50,81,109],"web":[5],"server":[6,127],"for":[7,117,123],"functional":[8,186],"and":[9,24,73,104,157,173,184],"structural":[10,124],"annotation":[11,66],"of":[12,38,49,55,99,111,149],"protein":[13,57],"sequences.":[14],"BAR(+)":[15,140,194],"is":[16,67,114,195],"based":[17],"on":[18,96],"large-scale":[20,51],"genome":[21],"cross":[22],"comparison":[23,54],"non-hierarchical":[26],"clustering":[27],"procedure":[28],"characterized":[29],"by":[30],"metric":[32],"that":[33],"ensures":[34],"reliable":[36],"transfer":[37],"features":[39],"within":[40,80],"clusters.":[41],"In":[42],"this":[43],"version,":[44],"the":[45,97,137],"method":[46],"takes":[47],"advantage":[48],"pairwise":[52,130],"sequence":[53,65,100],"13,495,736":[56],"chains":[58],"also":[59,128],"including":[60],"988":[61],"complete":[62],"proteomes.":[63],"Available":[64],"derived":[68],"from":[69,136],"UniProtKB,":[70],"GO,":[71],"Pfam":[72,169,185],"PDB.":[74],"When":[75],"PDB":[76,151,161,171],"templates":[77],"are":[78,94,105,188,190],"present":[79,143],"cluster":[82],"(with":[83],"or":[84,153,189],"without":[85,154,163,170],"their":[86],"SCOP":[87,155],"classification),":[88],"profile":[89],"Hidden":[90],"Markov":[91],"Models":[92],"(HMMs)":[93],"computed":[95,135],"basis":[98],"to":[101],"structure":[102],"alignment":[103],"cluster-associated":[106],"(Cluster-HMM).":[107],"Therefrom,":[108],"library":[110],"10,858":[112],"HMMs":[113],"made":[115],"available":[116,196],"aligning":[118],"even":[119],"distantly":[120],"related":[121],"sequences":[122],"modelling.":[125],"The":[126],"provides":[129],"query":[131],"sequence-structural":[132],"target":[133],"alignments":[134],"correspondent":[138],"Cluster-HMM.":[139],"in":[141],"its":[142],"version":[144],"allows":[145],"three":[146],"main":[147],"categories":[148],"annotation:":[150],"[with":[152],"(*)]":[156],"GO":[158,164,167,183],"and/or":[159,165,168],"Pfam;":[160,166],"(*)":[162,172],"no":[174],"annotation.":[175],"Each":[176],"category":[177],"can":[178],"further":[179],"comprise":[180],"clusters":[181],"where":[182],"annotations":[187],"not":[191],"statistically":[192],"significant.":[193],"at":[197],"http://bar.biocomp.unibo.it/bar2.0.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":7},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
