{"id":"https://openalex.org/W2167029191","doi":"https://doi.org/10.1093/nar/gkr288","title":"R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments","display_name":"R.E.D. Server: a web service for deriving RESP and ESP charges and building force field libraries for new molecules and molecular fragments","publication_year":2011,"publication_date":"2011-05-23","ids":{"openalex":"https://openalex.org/W2167029191","doi":"https://doi.org/10.1093/nar/gkr288","mag":"2167029191","pmid":"https://pubmed.ncbi.nlm.nih.gov/21609950"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr288","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr288","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W511/18782715/gkr288.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W511/18782715/gkr288.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066191983","display_name":"Enguerran Vanquelef","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Enguerran Vanquelef","raw_affiliation_strings":["Laboratoire des Glucides, CNRS UMR 6219-UFR de Pharmacie, Universit\u00e9 de Picardie-Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1, France","Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219-UFR de Pharmacie, Universit\u00e9 de Picardie-Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4647051"]},{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078835391","display_name":"Sabrina Simon","orcid":"https://orcid.org/0000-0001-8560-0985"},"institutions":[{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sabrina Simon","raw_affiliation_strings":["Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]},{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061692031","display_name":"Gaelle Marquant","orcid":null},"institutions":[{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gaelle Marquant","raw_affiliation_strings":["Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]},{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060405896","display_name":"Elodie Garcia","orcid":"https://orcid.org/0009-0006-5336-1661"},"institutions":[{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elodie Garcia","raw_affiliation_strings":["Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]},{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046629000","display_name":"Geoffroy Klimerak","orcid":null},"institutions":[{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Geoffroy Klimerak","raw_affiliation_strings":["Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]},{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069454764","display_name":"Jean Charles Delepine","orcid":null},"institutions":[{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean Charles Delepine","raw_affiliation_strings":["Universite de Picardie -Jules Verne, Amiens, France and","Universite \u00b4de Picardie -Jules Verne, Amiens, France and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universite de Picardie -Jules Verne, Amiens, France and","institution_ids":["https://openalex.org/I4647051"]},{"raw_affiliation_string":"Universite \u00b4de Picardie -Jules Verne, Amiens, France and","institution_ids":["https://openalex.org/I4647051"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032185922","display_name":"Piotr Cieplak","orcid":"https://orcid.org/0000-0003-0700-5691"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Piotr Cieplak","raw_affiliation_strings":["Sanford|Burnham Medical Research Institute, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sanford|Burnham Medical Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113582577","display_name":"Fran\u00e7ois\u2010Yves Dupradeau","orcid":null},"institutions":[{"id":"https://openalex.org/I4647051","display_name":"Universit\u00e9 de Picardie Jules Verne","ror":"https://ror.org/01gyxrk03","country_code":"FR","type":"education","lineage":["https://openalex.org/I4647051"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois-Yves Dupradeau","raw_affiliation_strings":["Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire des Glucides, CNRS UMR 6219 -UFR de Pharmacie, Universite \u00b4de Picardie -Jules Verne, 1, rue des Louvels, F-80037 Amiens cedex 1,","institution_ids":["https://openalex.org/I4647051"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.3591,"has_fulltext":true,"cited_by_count":834,"citation_normalized_percentile":{"value":0.98828418,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"39","issue":"suppl_2","first_page":"W511","last_page":"W517"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12748","display_name":"Molecular spectroscopy and chirality","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.7010898590087891},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5912010669708252},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5358530282974243},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.535197377204895},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5155282020568848},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44310805201530457},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.41600707173347473},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.3913859724998474},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3591793179512024},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3340773284435272},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2691456973552704},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.25303149223327637},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1466396450996399},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1376640498638153},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.1015901267528534},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08951407670974731}],"concepts":[{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.7010898590087891},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5912010669708252},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5358530282974243},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.535197377204895},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5155282020568848},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44310805201530457},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.41600707173347473},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3913859724998474},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3591793179512024},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3340773284435272},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2691456973552704},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25303149223327637},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1466396450996399},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1376640498638153},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.1015901267528534},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08951407670974731},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047250","descriptor_name":"Calixarenes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047250","descriptor_name":"Calixarenes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047250","descriptor_name":"Calixarenes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D055672","descriptor_name":"Static Electricity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055672","descriptor_name":"Static Electricity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055672","descriptor_name":"Static Electricity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkr288","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr288","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W511/18782715/gkr288.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3125739","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125739","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmid:21609950","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21609950","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/nar/gkr288","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr288","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W511/18782715/gkr288.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G4857105188","display_name":null,"funder_award_id":"R01GM079383","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8759326567","display_name":null,"funder_award_id":"GM079383","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167029191.pdf","grobid_xml":"https://content.openalex.org/works/W2167029191.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W625272620","https://openalex.org/W1499094942","https://openalex.org/W1504770578","https://openalex.org/W1507411402","https://openalex.org/W1579594936","https://openalex.org/W1650728208","https://openalex.org/W1653050201","https://openalex.org/W1976161355","https://openalex.org/W1977255290","https://openalex.org/W1979046104","https://openalex.org/W2014118668","https://openalex.org/W2015530654","https://openalex.org/W2022950330","https://openalex.org/W2035199159","https://openalex.org/W2037535298","https://openalex.org/W2041074466","https://openalex.org/W2041189078","https://openalex.org/W2045364254","https://openalex.org/W2050333027","https://openalex.org/W2051381895","https://openalex.org/W2052329232","https://openalex.org/W2060130346","https://openalex.org/W2063831812","https://openalex.org/W2070753604","https://openalex.org/W2078026043","https://openalex.org/W2080921239","https://openalex.org/W2081847959","https://openalex.org/W2095145098","https://openalex.org/W2098943363","https://openalex.org/W2100304097","https://openalex.org/W2105564187","https://openalex.org/W2107029002","https://openalex.org/W2118233996","https://openalex.org/W2122199548","https://openalex.org/W2137056475","https://openalex.org/W2140020886","https://openalex.org/W2144288821","https://openalex.org/W2147993766","https://openalex.org/W2149263899","https://openalex.org/W2151334055","https://openalex.org/W2159010139","https://openalex.org/W6660636609","https://openalex.org/W6667946926"],"related_works":["https://openalex.org/W579810227","https://openalex.org/W2952780262","https://openalex.org/W2979495269","https://openalex.org/W2392917763","https://openalex.org/W2083429127","https://openalex.org/W2358855848","https://openalex.org/W2142145894","https://openalex.org/W2033808215","https://openalex.org/W2807110902","https://openalex.org/W2359307945"],"abstract_inverted_index":{"R.E.D.":[0,61,76,155,176,194],"Server":[1,62,156,177,195],"is":[2,149],"a":[3,109,160,182],"unique,":[4],"open":[5],"web":[6],"service,":[7],"designed":[8],"to":[9,17,28,33,48,93,118,169,189],"derive":[10,34,119],"non-polarizable":[11],"RESP":[12,68,120],"and":[13,16,57,70,103,174],"ESP":[14,122],"charges":[15,39,123],"build":[18],"force":[19,42,52,110,126,141,145],"field":[20,43,53,111,127,142,146],"libraries":[21,44,128,143],"for":[22],"new":[23],"molecules/molecular":[24],"fragments.":[25],"It":[26],"provides":[27],"computational":[29],"biologists":[30],"the":[31,67,71,75,130,191],"means":[32],"rigorously":[35,94],"molecular":[36,58],"electrostatic":[37],"potential-based":[38],"embedded":[40,124],"in":[41,51,125,129,154],"that":[45],"are":[46,116],"ready":[47],"be":[49],"used":[50,117],"development,":[54],"charge":[55],"validation":[56],"dynamics":[59],"simulations.":[60],"interfaces":[63],"quantum":[64],"mechanics":[65],"programs,":[66],"program":[69],"latest":[72],"version":[73],"of":[74,89,140,193],"tools.":[77],"A":[78],"two":[79],"step":[80],"approach":[81],"has":[82],"been":[83],"developed.":[84],"The":[85],"first":[86],"one":[87],"consists":[88],"preparing":[90],"P2N":[91,114],"file(s)":[92],"define":[95],"key":[96],"elements":[97],"such":[98],"as":[99,179,181],"atom":[100],"names,":[101],"topology":[102,147],"chemical":[104],"equivalencing":[105],"needed":[106],"when":[107],"building":[108],"library.":[112],"Then,":[113],"files":[115,173],"or":[121,144],"Tripos":[131],"mol2":[132],"format.":[133],"In":[134],"complex":[135],"cases":[136],"an":[137],"entire":[138],"set":[139],"database":[148],"generated.":[150],"Other":[151],"features":[152],"developed":[153],"include":[157],"help":[158],"services,":[159],"demonstration,":[161],"tutorials,":[162],"frequently":[163],"asked":[164],"questions,":[165],"Jmol-based":[166],"tools":[167],"useful":[168],"construct":[170],"PDB":[171],"input":[172],"parse":[175],"outputs":[178],"well":[180],"graphical":[183],"queuing":[184],"system":[185],"allowing":[186],"any":[187],"user":[188],"check":[190],"status":[192],"jobs.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":39},{"year":2025,"cited_by_count":54},{"year":2024,"cited_by_count":72},{"year":2023,"cited_by_count":72},{"year":2022,"cited_by_count":85},{"year":2021,"cited_by_count":56},{"year":2020,"cited_by_count":55},{"year":2019,"cited_by_count":64},{"year":2018,"cited_by_count":75},{"year":2017,"cited_by_count":74},{"year":2016,"cited_by_count":51},{"year":2015,"cited_by_count":57},{"year":2014,"cited_by_count":39},{"year":2013,"cited_by_count":26},{"year":2012,"cited_by_count":12}],"updated_date":"2026-08-13T07:04:57.449891","created_date":"2025-10-10T00:00:00"}
