{"id":"https://openalex.org/W2131575287","doi":"https://doi.org/10.1093/nar/gkr249","title":"WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs","display_name":"WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs","publication_year":2011,"publication_date":"2011-04-22","ids":{"openalex":"https://openalex.org/W2131575287","doi":"https://doi.org/10.1093/nar/gkr249","mag":"2131575287","pmid":"https://pubmed.ncbi.nlm.nih.gov/21515634"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr249","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W50/7624055/gkr249.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W50/7624055/gkr249.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020058613","display_name":"Anton I. Petrov","orcid":"https://orcid.org/0000-0001-7279-2682"},"institutions":[{"id":"https://openalex.org/I157417397","display_name":"Bowling Green State University","ror":"https://ror.org/00ay7va13","country_code":"US","type":"education","lineage":["https://openalex.org/I157417397"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. I. Petrov","raw_affiliation_strings":["Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, USA","Department of Biological Sciences, Bowling Green State University Bowling Green, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Bowling Green State University, Bowling Green, OH, USA","institution_ids":["https://openalex.org/I157417397"]},{"raw_affiliation_string":"Department of Biological Sciences, Bowling Green State University Bowling Green, OH, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032629392","display_name":"C. L. Zirbel","orcid":null},"institutions":[{"id":"https://openalex.org/I157417397","display_name":"Bowling Green State University","ror":"https://ror.org/00ay7va13","country_code":"US","type":"education","lineage":["https://openalex.org/I157417397"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. L. Zirbel","raw_affiliation_strings":["Department of Mathematics and Statistics and","Department of Biological Sciences, 2 Department of Mathematics and Statistics and 3 Department of Chemistry, Bowling Green State University, Bowling Green, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics and","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Mathematics and Statistics and 3 Department of Chemistry, Bowling Green State University, Bowling Green, OH, USA","institution_ids":["https://openalex.org/I157417397"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079806827","display_name":"Neocles B. Leontis","orcid":"https://orcid.org/0000-0003-3521-5119"},"institutions":[{"id":"https://openalex.org/I157417397","display_name":"Bowling Green State University","ror":"https://ror.org/00ay7va13","country_code":"US","type":"education","lineage":["https://openalex.org/I157417397"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. B. Leontis","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Mathematics and Statistics and 3 Department of Chemistry, Bowling Green State University, Bowling Green, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Mathematics and Statistics and 3 Department of Chemistry, Bowling Green State University, Bowling Green, OH, USA","institution_ids":["https://openalex.org/I157417397"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020058613"],"corresponding_institution_ids":["https://openalex.org/I157417397"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.335,"has_fulltext":true,"cited_by_count":69,"citation_normalized_percentile":{"value":0.93016532,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"39","issue":"suppl","first_page":"W50","last_page":"W55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6005716323852539},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.529310405254364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4974575340747833},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.4863625168800354},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4746181070804596},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.4698159992694855},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.46065402030944824},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4539778232574463},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.43010130524635315},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.42320170998573303},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41880369186401367},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3256116509437561},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2876863479614258},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2013334035873413},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.11803308129310608},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11614331603050232},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09335383772850037}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6005716323852539},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.529310405254364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4974575340747833},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.4863625168800354},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4746181070804596},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.4698159992694855},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.46065402030944824},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4539778232574463},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.43010130524635315},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.42320170998573303},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41880369186401367},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3256116509437561},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2876863479614258},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2013334035873413},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.11803308129310608},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11614331603050232},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09335383772850037},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkr249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr249","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W50/7624055/gkr249.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21515634","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21515634","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125732","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125732","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:scholarworks.bgsu.edu:bio_sci_pub-1031","is_oa":false,"landing_page_url":"https://scholarworks.bgsu.edu/bio_sci_pub/35","pdf_url":null,"source":{"id":"https://openalex.org/S4306402596","display_name":"ScholarWorks@BGSU (Bowling Green State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157417397","host_organization_name":"Bowling Green State University","host_organization_lineage":["https://openalex.org/I157417397"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biological Sciences Faculty Publications","raw_type":"text"},{"id":"pmh:oai:scholarworks.bgsu.edu:chem_pub-1019","is_oa":false,"landing_page_url":"https://scholarworks.bgsu.edu/chem_pub/2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402596","display_name":"ScholarWorks@BGSU (Bowling Green State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157417397","host_organization_name":"Bowling Green State University","host_organization_lineage":["https://openalex.org/I157417397"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Chemistry Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr249","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr249","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W50/7624055/gkr249.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3000404365","display_name":null,"funder_award_id":"GM085328","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3412934622","display_name":null,"funder_award_id":"R01GM085328","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3453462783","display_name":null,"funder_award_id":"GM0853","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7692871242","display_name":null,"funder_award_id":"1R01GM085328-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131575287.pdf","grobid_xml":"https://content.openalex.org/works/W2131575287.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1487900381","https://openalex.org/W1580895464","https://openalex.org/W1605797572","https://openalex.org/W1982680051","https://openalex.org/W1984882637","https://openalex.org/W1993619986","https://openalex.org/W2003122343","https://openalex.org/W2007615447","https://openalex.org/W2052841473","https://openalex.org/W2069779808","https://openalex.org/W2070136856","https://openalex.org/W2090278190","https://openalex.org/W2096184392","https://openalex.org/W2106478835","https://openalex.org/W2108927984","https://openalex.org/W2119916585","https://openalex.org/W2120339119","https://openalex.org/W2134874046","https://openalex.org/W2136556521","https://openalex.org/W2137001143","https://openalex.org/W2144366714","https://openalex.org/W2167040380","https://openalex.org/W2170030776","https://openalex.org/W2170441710","https://openalex.org/W2171643158","https://openalex.org/W2916336743"],"related_works":["https://openalex.org/W4386361828","https://openalex.org/W576226539","https://openalex.org/W2808896479","https://openalex.org/W2133070749","https://openalex.org/W4318218930","https://openalex.org/W1978187259","https://openalex.org/W2061103938","https://openalex.org/W2889983362","https://openalex.org/W2982356100","https://openalex.org/W2029624882"],"abstract_inverted_index":{"WebFR3D":[0,31,64,78,106,187],"is":[1,188],"the":[2,36,165,169,174,178],"on-line":[3,33],"version":[4],"of":[5,39,82,127,154,173,180],"'Find":[6],"RNA":[7,15,27,129],"3D'":[8],"(FR3D),":[9],"a":[10,70,151],"program":[11],"for":[12,49,163],"annotating":[13],"atomic-resolution":[14],"3D":[16,28,56,130,155,175],"structure":[17,57,156],"files":[18],"and":[19,25,43,54,98,103,135,141,177],"searching":[20],"them":[21],"efficiently":[22],"to":[23,35,69,110],"locate":[24,111],"compare":[26],"structural":[29],"motifs.":[30],"provides":[32,161],"access":[34],"central":[37],"features":[38],"FR3D,":[40],"including":[41],"geometric":[42,61],"symbolic":[44,75],"search":[45,62,76,170],"modes,":[46,89],"without":[47],"need":[48],"installing":[50],"programs":[51],"or":[52,114,121,124,139,149],"downloading":[53],"maintaining":[55],"data":[58],"locally.":[59],"In":[60,74,87],"mode,":[63,77],"finds":[65,79],"all":[66,80,118],"motifs":[67,131],"similar":[68],"user-specified":[71,85],"query":[72],"structure.":[73],"sets":[81],"nucleotides":[83,102],"making":[84],"interactions.":[86,105,186],"both":[88],"users":[90],"can":[91,107],"specify":[92],"sequence,":[93],"sequence-continuity,":[94],"base":[95,119],"pairing,":[96],"base-stacking":[97],"other":[99,122],"constraints":[100],"on":[101],"their":[104,181],"be":[108],"used":[109],"hairpin,":[112],"internal":[113,137],"junction":[115],"loops,":[116],"list":[117],"pairs":[120],"interactions,":[123],"find":[125],"instances":[126,166],"recurrent":[128],"(such":[132],"as":[133],"sarcin-ricin":[134],"kink-turn":[136],"loops":[138],"T-":[140],"GNRA":[142],"hairpin":[143],"loops)":[144],"in":[145],"any":[146],"PDB":[147],"file":[148],"across":[150],"whole":[152],"set":[153],"files.":[157],"The":[158],"output":[159],"page":[160],"facilities":[162],"comparing":[164],"returned":[167],"by":[168,171],"superposition":[172],"structures":[176],"alignment":[179],"sequences":[182],"annotated":[183],"with":[184],"pairwise":[185],"available":[189],"at":[190],"http://rna.bgsu.edu/webfr3d.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
