{"id":"https://openalex.org/W2114977400","doi":"https://doi.org/10.1093/nar/gkr248","title":"The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences","display_name":"The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences","publication_year":2011,"publication_date":"2011-05-23","ids":{"openalex":"https://openalex.org/W2114977400","doi":"https://doi.org/10.1093/nar/gkr248","mag":"2114977400","pmid":"https://pubmed.ncbi.nlm.nih.gov/21609960"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr248","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr248","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W107/7624033/gkr248.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W107/7624033/gkr248.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044386095","display_name":"Stefan E. Seemann","orcid":"https://orcid.org/0000-0002-2359-4927"},"institutions":[{"id":"https://openalex.org/I180519160","display_name":"Copenhagen Business School","ror":"https://ror.org/04sppb023","country_code":"DK","type":"education","lineage":["https://openalex.org/I180519160"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"S. E. Seemann","raw_affiliation_strings":["Center for Non-coding RNA in Technology and Health, Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Non-coding RNA in Technology and Health, Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg, Denmark","institution_ids":["https://openalex.org/I180519160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064774232","display_name":"Peter Menzel","orcid":"https://orcid.org/0000-0003-4964-0685"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE","DK"],"is_corresponding":false,"raw_author_name":"P. Menzel","raw_affiliation_strings":["Center for Non-coding RNA in Technology and Health, 2 Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg, Denmark and 3 Bioinformatics Group, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany","University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Non-coding RNA in Technology and Health, 2 Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg, Denmark and 3 Bioinformatics Group, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I161046081"]},{"raw_affiliation_string":"University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE","DK"],"is_corresponding":false,"raw_author_name":"R. Backofen","raw_affiliation_strings":["Center for Non-coding RNA in Technology and Health, 2 Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg, Denmark and 3 Bioinformatics Group, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany","University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Non-coding RNA in Technology and Health, 2 Division of Genetics and Bioinformatics, IBHV, University of Copenhagen, Gr\u00f8nneg\u00e5rdsvej 3, DK-1870 Frederiksberg, Denmark and 3 Bioinformatics Group, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I161046081"]},{"raw_affiliation_string":"University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004614832","display_name":"Jan Gorodkin","orcid":"https://orcid.org/0000-0001-5823-4000"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"J. Gorodkin","raw_affiliation_strings":["University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.3115,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.79674152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"39","issue":"suppl","first_page":"W107","last_page":"W111"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.939736008644104},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6501165628433228},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5530970096588135},{"id":"https://openalex.org/keywords/intermolecular-force","display_name":"Intermolecular force","score":0.4875921607017517},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.4840666353702545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41972577571868896},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3870534896850586},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24344900250434875},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21829059720039368},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16904038190841675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.0886981189250946},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08223500847816467},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.07895398139953613}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.939736008644104},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6501165628433228},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5530970096588135},{"id":"https://openalex.org/C166950319","wikidata":"https://www.wikidata.org/wiki/Q245031","display_name":"Intermolecular force","level":3,"score":0.4875921607017517},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4840666353702545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41972577571868896},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3870534896850586},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24344900250434875},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21829059720039368},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16904038190841675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0886981189250946},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08223500847816467},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.07895398139953613},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016372","descriptor_name":"RNA, Antisense","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016372","descriptor_name":"RNA, Antisense","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016372","descriptor_name":"RNA, Antisense","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020121","descriptor_name":"5' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020121","descriptor_name":"5' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020121","descriptor_name":"5' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr248","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr248","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W107/7624033/gkr248.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21609960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21609960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3125731","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125731","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/9bfc0192-8b07-4f80-849b-7b76b53f8816","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/9bfc0192-8b07-4f80-849b-7b76b53f8816","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Seemann , E S , Menzel , K P , Backofen , R & Gorodkin , J 2011 , ' The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences ' , Nucleic Acids Research , vol. 39 , no. Suppl. 2 , pp. W107-W111 . https://doi.org/10.1093/nar/gkr248","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr248","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr248","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W107/7624033/gkr248.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335354","display_name":"Strategic Research Council","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114977400.pdf","grobid_xml":"https://content.openalex.org/works/W2114977400.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W165213868","https://openalex.org/W1543796220","https://openalex.org/W1976021976","https://openalex.org/W2041877620","https://openalex.org/W2085115334","https://openalex.org/W2092802254","https://openalex.org/W2104702173","https://openalex.org/W2107728696","https://openalex.org/W2114094654","https://openalex.org/W2123808602","https://openalex.org/W2124050695","https://openalex.org/W2124995041","https://openalex.org/W2137640371","https://openalex.org/W2141411594","https://openalex.org/W2154241726","https://openalex.org/W2164299596","https://openalex.org/W2170157200","https://openalex.org/W2170909437","https://openalex.org/W2803927613"],"related_works":["https://openalex.org/W2626999804","https://openalex.org/W4250004941","https://openalex.org/W2736202444","https://openalex.org/W2049015391","https://openalex.org/W2137014442","https://openalex.org/W1533158771","https://openalex.org/W122082928","https://openalex.org/W2104288289","https://openalex.org/W2521397622","https://openalex.org/W4294067941"],"abstract_inverted_index":{"The":[0,62,121],"function":[1],"of":[2,22,33,92,115],"non-coding":[3],"RNA":[4,42,51,55,59,104],"genes":[5],"largely":[6],"depends":[7],"on":[8,67],"their":[9],"secondary":[10,23],"structure":[11,24,56],"and":[12,25,36,57,73,77,112],"the":[13,31,68,93,96,108],"interaction":[14,27,60],"with":[15,39,119],"other":[16],"molecules.":[17],"Thus,":[18],"an":[19],"accurate":[20],"prediction":[21],"RNA-RNA":[26],"is":[28],"essential":[29],"for":[30,53,58],"understanding":[32],"biological":[34],"roles":[35],"pathways":[37],"associated":[38],"a":[40,86],"specific":[41],"gene.":[43],"We":[44],"present":[45],"web":[46,63,97,122],"servers":[47,64,98,123],"to":[48,89,102],"analyze":[49],"multiple":[50,113],"sequences":[52],"common":[54],"sites.":[61],"are":[65,124],"based":[66],"recent":[69],"PET":[70],"(Probabilistic":[71],"Evolutionary":[72],"Thermodynamic)":[74],"models":[75],"PETfold":[76],"PETcofold,":[78],"but":[79],"add":[80],"user":[81],"friendly":[82],"features":[83],"ranging":[84],"from":[85],"graphical":[87],"layer":[88],"interactive":[90],"usage":[91],"predictors.":[94],"Additionally,":[95],"provide":[99],"direct":[100],"access":[101],"annotated":[103],"alignments,":[105],"such":[106],"as":[107],"Rfam":[109],"10.0":[110],"database":[111],"alignments":[114],"16":[116],"vertebrate":[117],"genomes":[118],"human.":[120],"freely":[125],"available":[126],"at:":[127],"http://rth.dk/resources/petfold/":[128]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-03-07T13:37:22.277990","created_date":"2025-10-10T00:00:00"}
