{"id":"https://openalex.org/W2067098868","doi":"https://doi.org/10.1093/nar/gkr184","title":"The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction","display_name":"The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction","publication_year":2011,"publication_date":"2011-03-31","ids":{"openalex":"https://openalex.org/W2067098868","doi":"https://doi.org/10.1093/nar/gkr184","mag":"2067098868","pmid":"https://pubmed.ncbi.nlm.nih.gov/21459847"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr184","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W171/7623890/gkr184.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W171/7623890/gkr184.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062814888","display_name":"Daniel B. Roche","orcid":"https://orcid.org/0000-0002-9204-1840"},"institutions":[{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. B. Roche","raw_affiliation_strings":["School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, UK","School of Biological Sciences University of Reading Whiteknights Reading RG6 6AS UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, UK","institution_ids":["https://openalex.org/I71052956"]},{"raw_affiliation_string":"School of Biological Sciences University of Reading Whiteknights Reading RG6 6AS UK","institution_ids":["https://openalex.org/I71052956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110263922","display_name":"Maria T. Buenavista","orcid":null},"institutions":[{"id":"https://openalex.org/I2802711169","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802711169"]},{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. T. Buenavista","raw_affiliation_strings":["School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2 Biocomputing section, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD and 3 Diamond Light Source, Beamline B23, Chilton, Didcot OX11 ODE, UK","University of Reading, Reading, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2 Biocomputing section, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD and 3 Diamond Light Source, Beamline B23, Chilton, Didcot OX11 ODE, UK","institution_ids":["https://openalex.org/I2802711169","https://openalex.org/I4210086857","https://openalex.org/I71052956"]},{"raw_affiliation_string":"University of Reading, Reading, United Kingdom","institution_ids":["https://openalex.org/I71052956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017531384","display_name":"Stuart Tetchner","orcid":null},"institutions":[{"id":"https://openalex.org/I2802711169","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802711169"]},{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. J. Tetchner","raw_affiliation_strings":["School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2 Biocomputing section, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD and 3 Diamond Light Source, Beamline B23, Chilton, Didcot OX11 ODE, UK","University of Reading, Reading, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2 Biocomputing section, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD and 3 Diamond Light Source, Beamline B23, Chilton, Didcot OX11 ODE, UK","institution_ids":["https://openalex.org/I2802711169","https://openalex.org/I4210086857","https://openalex.org/I71052956"]},{"raw_affiliation_string":"University of Reading, Reading, United Kingdom","institution_ids":["https://openalex.org/I71052956"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067569944","display_name":"Liam J. McGuffin","orcid":"https://orcid.org/0000-0003-4501-4767"},"institutions":[{"id":"https://openalex.org/I2802711169","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802711169"]},{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"L. J. McGuffin","raw_affiliation_strings":["School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2 Biocomputing section, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD and 3 Diamond Light Source, Beamline B23, Chilton, Didcot OX11 ODE, UK","University of Reading, Reading, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2 Biocomputing section, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD and 3 Diamond Light Source, Beamline B23, Chilton, Didcot OX11 ODE, UK","institution_ids":["https://openalex.org/I2802711169","https://openalex.org/I4210086857","https://openalex.org/I71052956"]},{"raw_affiliation_string":"University of Reading, Reading, United Kingdom","institution_ids":["https://openalex.org/I71052956"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067569944"],"corresponding_institution_ids":["https://openalex.org/I2802711169","https://openalex.org/I4210086857","https://openalex.org/I71052956"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.015,"has_fulltext":true,"cited_by_count":108,"citation_normalized_percentile":{"value":0.94936747,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"39","issue":"suppl","first_page":"W171","last_page":"W176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/casp","display_name":"CASP","score":0.7718102335929871},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7364664673805237},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5785051584243774},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5499935150146484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5377099514007568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.520271360874176},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4943392276763916},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.4508294463157654},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.4431927800178528},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40088382363319397},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3929292857646942},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3249782919883728},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2685534656047821},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.21488556265830994}],"concepts":[{"id":"https://openalex.org/C66153294","wikidata":"https://www.wikidata.org/wiki/Q899291","display_name":"CASP","level":4,"score":0.7718102335929871},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7364664673805237},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5785051584243774},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5499935150146484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5377099514007568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.520271360874176},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4943392276763916},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.4508294463157654},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.4431927800178528},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40088382363319397},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3929292857646942},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3249782919883728},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2685534656047821},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.21488556265830994},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr184","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W171/7623890/gkr184.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21459847","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21459847","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:centaur.reading.ac.uk:19684","is_oa":false,"landing_page_url":"https://centaur.reading.ac.uk/19684/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402273","display_name":"CentAUR (University of Reading)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71052956","host_organization_name":"University of Reading","host_organization_lineage":["https://openalex.org/I71052956"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3125722","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3125722","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr184","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_2/W171/7623890/gkr184.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313096","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293"},{"id":"https://openalex.org/F4320320240","display_name":"Research Councils UK","ror":"https://ror.org/00dq2kk65"},{"id":"https://openalex.org/F4320320326","display_name":"University of Reading","ror":"https://ror.org/05v62cm79"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2067098868.pdf","grobid_xml":"https://content.openalex.org/works/W2067098868.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1828921065","https://openalex.org/W1982250822","https://openalex.org/W1984071998","https://openalex.org/W2008807736","https://openalex.org/W2015530520","https://openalex.org/W2025996793","https://openalex.org/W2037312364","https://openalex.org/W2096979765","https://openalex.org/W2102245393","https://openalex.org/W2104879218","https://openalex.org/W2109553965","https://openalex.org/W2110483430","https://openalex.org/W2110863368","https://openalex.org/W2112284439","https://openalex.org/W2115336138","https://openalex.org/W2115652057","https://openalex.org/W2128484254","https://openalex.org/W2138116388","https://openalex.org/W2145268834","https://openalex.org/W2148676725","https://openalex.org/W2150831049","https://openalex.org/W2156368280","https://openalex.org/W2167661287"],"related_works":["https://openalex.org/W2411998238","https://openalex.org/W3198923619","https://openalex.org/W2093959518","https://openalex.org/W2334085108","https://openalex.org/W3199799076","https://openalex.org/W2561391236","https://openalex.org/W2147472674","https://openalex.org/W3199104097","https://openalex.org/W2155201844","https://openalex.org/W2946599741"],"abstract_inverted_index":{"The":[0,61,82,113,170],"IntFOLD":[1,155,171],"server":[2,7,28,114,156,172],"is":[3,65,173],"a":[4,36,68],"novel":[5,121],"independent":[6],"that":[8,40,56,71],"integrates":[9],"several":[10,163],"cutting":[11],"edge":[12],"methods":[13],"for":[14,54,63,88,96,106,124,130,136,141,147],"the":[15,27,101,154,166,176],"prediction":[16,43],"of":[17,91,104,119],"structure":[18,126],"and":[19,48,78,144],"function":[20],"from":[21,153],"sequence.":[22],"Our":[23],"guiding":[24],"principles":[25],"behind":[26],"development":[29],"were":[30,157],"as":[31,67],"follows:":[32],"(i)":[33],"to":[34,46,50,159],"provide":[35],"simple":[37,69],"unified":[38],"resource":[39],"makes":[41],"our":[42],"software":[44],"accessible":[45],"all":[47,73],"(ii)":[49],"produce":[51],"integrated":[52,117],"output":[53,62],"predictions":[55,64,92],"can":[57],"be":[58,160],"easily":[59],"interpreted.":[60],"presented":[66],"table":[70],"summarizes":[72],"results":[74],"graphically":[75],"via":[76],"plots":[77],"annotated":[79],"3D":[80],"models.":[81],"raw":[83],"machine":[84],"readable":[85],"data":[86,111],"files":[87],"each":[89],"set":[90],"are":[93],"also":[94],"provided":[95],"developers,":[97],"which":[98],"comply":[99],"with":[100],"Critical":[102],"Assessment":[103],"Methods":[105],"Protein":[107],"Structure":[108],"Prediction":[109],"(CASP)":[110],"standards.":[112],"comprises":[115],"an":[116],"suite":[118],"five":[120],"methods:":[122],"nFOLD4,":[123],"tertiary":[125],"prediction;":[127,138,143],"ModFOLD":[128],"3.0,":[129],"model":[131],"quality":[132],"assessment;":[133],"DISOclust":[134],"2.0,":[135],"disorder":[137],"DomFOLD":[139],"2.0":[140],"domain":[142],"FunFOLD":[145],"1.0,":[146],"ligand":[148],"binding":[149],"site":[150],"prediction.":[151],"Predictions":[152],"found":[158],"competitive":[161],"in":[162,165],"categories":[164],"recent":[167],"CASP9":[168],"experiment.":[169],"available":[174],"at":[175],"following":[177],"web":[178],"site:":[179],"http://www.reading.ac.uk/bioinf/IntFOLD/.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":8}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
