{"id":"https://openalex.org/W1970776980","doi":"https://doi.org/10.1093/nar/gkr1189","title":"Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences","display_name":"Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences","publication_year":2011,"publication_date":"2011-12-06","ids":{"openalex":"https://openalex.org/W1970776980","doi":"https://doi.org/10.1093/nar/gkr1189","mag":"1970776980","pmid":"https://pubmed.ncbi.nlm.nih.gov/22146221"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr1189","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1189","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkr1189","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113724652","display_name":"Tiejuan Mi","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. Mi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269-2155, USA","Department of Computer Science & Engineering, University of Connecticut, Storrs, CT 06269 2155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269-2155, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of Computer Science & Engineering, University of Connecticut, Storrs, CT 06269 2155, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005531944","display_name":"Jerlin Camilus Merlin","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. C. Merlin","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046935599","display_name":"Sandeep Deverasetty","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Deverasetty","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073683942","display_name":"Michael R. Gryk","orcid":"https://orcid.org/0000-0002-3483-8384"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. R. Gryk","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092101169","display_name":"Toner Bill","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. J. Bill","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029251847","display_name":"Andrew Brooks","orcid":"https://orcid.org/0000-0002-9237-5349"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. W. Brooks","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027269590","display_name":"L. Y. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Y. Lee","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022941055","display_name":"Viraj Rathnayake","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Rathnayake","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108383084","display_name":"C. A. Ross","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. A. Ross","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086480463","display_name":"David P. Sargeant","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. P. Sargeant","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113526581","display_name":"Christy Strong","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. L. Strong","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074781623","display_name":"P. Watts","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Watts","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034177039","display_name":"Sanguthevar Rajasekaran","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Rajasekaran","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020526599","display_name":"Martin R. Schiller","orcid":"https://orcid.org/0000-0003-1671-6823"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. R. Schiller","raw_affiliation_strings":["University of Connecticut Health Center, Farmington, United States"],"affiliations":[{"raw_affiliation_string":"University of Connecticut Health Center, Farmington, United States","institution_ids":["https://openalex.org/I75929689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5113724652"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.4683,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.93135412,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D252","last_page":"D260"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7626243829727173},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5968552231788635},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5369014739990234},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4866233766078949},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.41382133960723877},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38480693101882935},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38002169132232666},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19189465045928955},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14710626006126404},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1423790156841278},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0608009397983551}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7626243829727173},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5968552231788635},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5369014739990234},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4866233766078949},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.41382133960723877},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38480693101882935},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38002169132232666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19189465045928955},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14710626006126404},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1423790156841278},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0608009397983551}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkr1189","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1189","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22146221","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22146221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digitalscholarship.unlv.edu:sls_fac_articles-1424","is_oa":true,"landing_page_url":"https://digitalscholarship.unlv.edu/sls_fac_articles/143","pdf_url":null,"source":{"id":"https://openalex.org/S4377196371","display_name":"Digital Scholarship - UNLV (University of Nevada Reno)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134113660","host_organization_name":"University of Nevada, Reno","host_organization_lineage":["https://openalex.org/I134113660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Life Sciences Faculty Publications","raw_type":"text"},{"id":"pmh:oai:oasis.library.unlv.edu:sls_fac_articles-1424","is_oa":true,"landing_page_url":"https://oasis.library.unlv.edu/sls_fac_articles/143","pdf_url":null,"source":{"id":"https://openalex.org/S4377196371","display_name":"Digital Scholarship - UNLV (University of Nevada Reno)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134113660","host_organization_name":"University of Nevada, Reno","host_organization_lineage":["https://openalex.org/I134113660"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Life Sciences Faculty Research","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D252","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D252","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245078","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245078","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr1189","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1189","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1236321187","https://openalex.org/W1559966695","https://openalex.org/W1836592012","https://openalex.org/W1974703047","https://openalex.org/W1980429866","https://openalex.org/W1981951679","https://openalex.org/W1999615477","https://openalex.org/W2007935695","https://openalex.org/W2019454936","https://openalex.org/W2029401739","https://openalex.org/W2030204844","https://openalex.org/W2043449832","https://openalex.org/W2043816461","https://openalex.org/W2054954101","https://openalex.org/W2063579599","https://openalex.org/W2065042047","https://openalex.org/W2069062661","https://openalex.org/W2078381702","https://openalex.org/W2079635715","https://openalex.org/W2083747978","https://openalex.org/W2085037886","https://openalex.org/W2086443788","https://openalex.org/W2096525273","https://openalex.org/W2097593311","https://openalex.org/W2097817417","https://openalex.org/W2102821476","https://openalex.org/W2106477324","https://openalex.org/W2106590884","https://openalex.org/W2110141748","https://openalex.org/W2115276309","https://openalex.org/W2122863289","https://openalex.org/W2122884883","https://openalex.org/W2123121534","https://openalex.org/W2132582966","https://openalex.org/W2133177319","https://openalex.org/W2134726898","https://openalex.org/W2139814514","https://openalex.org/W2141468602","https://openalex.org/W2148781989","https://openalex.org/W2148960594","https://openalex.org/W2150271494","https://openalex.org/W2160421210","https://openalex.org/W2161062388","https://openalex.org/W2162091294","https://openalex.org/W2162172965","https://openalex.org/W2165703995","https://openalex.org/W2168514491","https://openalex.org/W2772934464","https://openalex.org/W2916767477","https://openalex.org/W2917375902","https://openalex.org/W4211208250","https://openalex.org/W4231041617","https://openalex.org/W4246995357","https://openalex.org/W4320800236"],"related_works":["https://openalex.org/W2003932708","https://openalex.org/W2027108423","https://openalex.org/W2383918176","https://openalex.org/W1855666948","https://openalex.org/W2758561209","https://openalex.org/W1548095260","https://openalex.org/W2594414941","https://openalex.org/W2781711915","https://openalex.org/W2112817590","https://openalex.org/W1555291398"],"abstract_inverted_index":{"Minimotif":[0],"Miner":[1],"(MnM":[2],"available":[3],"at":[4,31],"http://minimotifminer.org":[5],"or":[6],"http://mnm.engr.uconn.edu)":[7],"is":[8],"an":[9],"online":[10,89],"database":[11,44,90],"for":[12],"identifying":[13],"new":[14,68,96],"minimotifs":[15,56],"in":[16,30,98],"protein":[17],"queries.":[18],"Minimotifs":[19],"are":[20,57],"short":[21,55],"contiguous":[22],"peptide":[23],"sequences":[24],"that":[25,77],"have":[26],"a":[27,67,84],"known":[28],"function":[29],"least":[32],"one":[33],"protein.":[34],"Here":[35],"we":[36,64],"report":[37],"the":[38,42],"third":[39],"release":[40],"of":[41,70,102],"MnM":[43],"which":[45],"has":[46],"now":[47],"grown":[48],"60-fold":[49],"to":[50,94],"approximately":[51],"300,000":[52],"minimotifs.":[53],"Since":[54],"by":[58],"their":[59],"nature":[60],"not":[61],"very":[62],"complex":[63],"also":[65],"summarize":[66],"set":[69],"false-positive":[71],"filters":[72],"and":[73,100],"linear":[74],"regression":[75],"scoring":[76],"vastly":[78],"enhance":[79],"minimotif":[80],"prediction":[81],"accuracy":[82],"on":[83],"test":[85],"data":[86],"set.":[87],"This":[88],"can":[91],"be":[92],"used":[93],"predict":[95],"functions":[97],"proteins":[99],"causes":[101],"disease.":[103]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
