{"id":"https://openalex.org/W2091882482","doi":"https://doi.org/10.1093/nar/gkr1133","title":"CharProtDB: a database of experimentally characterized protein annotations","display_name":"CharProtDB: a database of experimentally characterized protein annotations","publication_year":2011,"publication_date":"2011-12-02","ids":{"openalex":"https://openalex.org/W2091882482","doi":"https://doi.org/10.1093/nar/gkr1133","mag":"2091882482","pmid":"https://pubmed.ncbi.nlm.nih.gov/22140108"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr1133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1133","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D237/9479478/gkr1133.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D237/9479478/gkr1133.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008892080","display_name":"Ramana Madupu","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. Madupu","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA. rmadupu@jcvi.org","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA. rmadupu@jcvi.org","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072541085","display_name":"Alexander Richter","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Richter","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091135427","display_name":"Robert J. Dodson","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. J. Dodson","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083686393","display_name":"Lauren Brinkac","orcid":"https://orcid.org/0000-0002-7549-7280"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Brinkac","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071328878","display_name":"Derek M. Harkins","orcid":"https://orcid.org/0000-0002-4704-0275"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Harkins","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110256355","display_name":"Scott Durkin","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Durkin","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074814702","display_name":"S. Shrivastava","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Shrivastava","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111603387","display_name":"Granger Sutton","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Sutton","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027242690","display_name":"Daniel H. Haft","orcid":"https://orcid.org/0000-0001-8101-4938"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Haft","raw_affiliation_strings":["J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA"],"affiliations":[{"raw_affiliation_string":"J Craig Venter institute, 9704 Medical Center Drive Rockville, MD 20850, USA","institution_ids":["https://openalex.org/I1301553790"]},{"raw_affiliation_string":"J. Craig Venter Institute; 9704 Medical Center Drive; Rockville; MD; 20850; USA","institution_ids":["https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5008892080"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.09642889,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.85863478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D237","last_page":"D241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7967153787612915},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7145019769668579},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.6044032573699951},{"id":"https://openalex.org/keywords/accession-number","display_name":"Accession number (library science)","score":0.5616708397865295},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5480957627296448},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5435911417007446},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.44970250129699707},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4338385760784149},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4297308325767517},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4221230745315552},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.42033281922340393},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40701159834861755},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35771411657333374},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35227859020233154},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2746446132659912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25997865200042725},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2591899633407593},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.17957085371017456}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7967153787612915},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7145019769668579},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.6044032573699951},{"id":"https://openalex.org/C15190224","wikidata":"https://www.wikidata.org/wiki/Q1417099","display_name":"Accession number (library science)","level":4,"score":0.5616708397865295},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5480957627296448},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5435911417007446},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.44970250129699707},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4338385760784149},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4297308325767517},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4221230745315552},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.42033281922340393},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40701159834861755},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35771411657333374},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35227859020233154},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2746446132659912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25997865200042725},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2591899633407593},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.17957085371017456},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr1133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1133","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D237/9479478/gkr1133.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22140108","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22140108","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D237","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D237","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245046","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245046","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr1133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1133","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D237/9479478/gkr1133.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2091882482.pdf","grobid_xml":"https://content.openalex.org/works/W2091882482.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1236321187","https://openalex.org/W1509280691","https://openalex.org/W1969447189","https://openalex.org/W1976007598","https://openalex.org/W1984345785","https://openalex.org/W1997710299","https://openalex.org/W2023046869","https://openalex.org/W2034837383","https://openalex.org/W2068886104","https://openalex.org/W2082703912","https://openalex.org/W2103461849","https://openalex.org/W2110679449","https://openalex.org/W2114347076","https://openalex.org/W2115595474","https://openalex.org/W2128807557","https://openalex.org/W2131399825","https://openalex.org/W2139915240","https://openalex.org/W2612240612","https://openalex.org/W4214952473"],"related_works":["https://openalex.org/W1976142521","https://openalex.org/W2884291362","https://openalex.org/W3014856251","https://openalex.org/W1562379515","https://openalex.org/W4200520333","https://openalex.org/W2101595316","https://openalex.org/W2167161805","https://openalex.org/W2052483969","https://openalex.org/W2091882482","https://openalex.org/W4221094432"],"abstract_inverted_index":{"CharProtDB":[0,33,68,94],"(http://www.jcvi.org/charprotdb/)":[1],"is":[2,116],"a":[3,12,122],"curated":[4],"database":[5,133],"of":[6,14,20,55,61,74,90],"biochemically":[7],"characterized":[8],"proteins.":[9],"It":[10],"provides":[11],"source":[13],"direct":[15,85],"rather":[16,86],"than":[17,87],"transitive":[18],"assignments":[19],"function,":[21],"designed":[22],"to":[23],"support":[24],"automated":[25],"annotation":[26,115],"pipelines.":[27],"The":[28,53,67],"initial":[29],"data":[30],"set":[31],"in":[32,93],"was":[34],"collected":[35],"through":[36],"manual":[37],"literature":[38],"curation":[39],"over":[40],"the":[41,46,119,131],"years":[42],"by":[43,72],"analysts":[44],"at":[45],"J.":[47],"Craig":[48],"Venter":[49],"Institute":[50,54],"(JCVI)":[51],"[formerly":[52],"Genomic":[56],"Research":[57],"(TIGR)]":[58],"as":[59],"part":[60],"their":[62],"prokaryotic":[63],"genome":[64],"sequencing":[65],"projects.":[66],"has":[69],"been":[70],"expanded":[71],"import":[73],"selected":[75],"records":[76],"from":[77],"publicly":[78],"available":[79],"protein":[80],"collections":[81],"whose":[82],"biocuration":[83],"indicated":[84],"homology-based":[88],"assignment":[89],"function.":[91],"Annotations":[92],"include":[95],"gene":[96],"name,":[97],"symbol":[98],"and":[99,111,128],"various":[100],"controlled":[101],"vocabulary":[102],"terms,":[103,107],"including":[104],"Gene":[105],"Ontology":[106],"Enzyme":[108],"Commission":[109],"number":[110],"TransportDB":[112],"accession.":[113],"Each":[114],"referenced":[117],"with":[118],"source;":[120],"ideally":[121],"journal":[123],"reference,":[124],"or,":[125],"if":[126],"imported":[127],"lacking":[129],"one,":[130],"original":[132],"source.":[134]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":7}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
