{"id":"https://openalex.org/W1995283805","doi":"https://doi.org/10.1093/nar/gkr1025","title":"TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function","display_name":"TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function","publication_year":2011,"publication_date":"2011-11-18","ids":{"openalex":"https://openalex.org/W1995283805","doi":"https://doi.org/10.1093/nar/gkr1025","mag":"1995283805","pmid":"https://pubmed.ncbi.nlm.nih.gov/22102574"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr1025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1025","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D351/9474830/gkr1025.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D351/9474830/gkr1025.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029643976","display_name":"Philipp F. Lange","orcid":"https://orcid.org/0000-0003-1171-5864"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"P. F. Lange","raw_affiliation_strings":["Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada V6T 1Z3. philipp.lange@ubc.ca","Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada V6T 1Z3"],"affiliations":[{"raw_affiliation_string":"Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada V6T 1Z3. philipp.lange@ubc.ca","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada V6T 1Z3","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090509934","display_name":"Pitter F. Huesgen","orcid":"https://orcid.org/0000-0002-0335-2242"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"P. F. Huesgen","raw_affiliation_strings":["Centre for Blood Research, 2Department of Oral Biological and Medical Sciences and 3Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3"],"affiliations":[{"raw_affiliation_string":"Centre for Blood Research, 2Department of Oral Biological and Medical Sciences and 3Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053252393","display_name":"Christopher M. Overall","orcid":"https://orcid.org/0000-0001-5844-2731"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"C. M. Overall","raw_affiliation_strings":["Centre for Blood Research, 2Department of Oral Biological and Medical Sciences and 3Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3"],"affiliations":[{"raw_affiliation_string":"Centre for Blood Research, 2Department of Oral Biological and Medical Sciences and 3Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029643976"],"corresponding_institution_ids":["https://openalex.org/I141945490"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.5346,"has_fulltext":true,"cited_by_count":62,"citation_normalized_percentile":{"value":0.89463041,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D351","last_page":"D361"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8459001779556274},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7056128978729248},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5911291241645813},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.566167950630188},{"id":"https://openalex.org/keywords/proteases","display_name":"Proteases","score":0.5470607280731201},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.47625064849853516},{"id":"https://openalex.org/keywords/cleavage","display_name":"Cleavage (geology)","score":0.4647367000579834},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.42097240686416626},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.41704100370407104},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3427773118019104},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33308976888656616},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1618116796016693},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.12067097425460815}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8459001779556274},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7056128978729248},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5911291241645813},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.566167950630188},{"id":"https://openalex.org/C182220744","wikidata":"https://www.wikidata.org/wiki/Q7251226","display_name":"Proteases","level":3,"score":0.5470607280731201},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.47625064849853516},{"id":"https://openalex.org/C175156509","wikidata":"https://www.wikidata.org/wiki/Q1990218","display_name":"Cleavage (geology)","level":3,"score":0.4647367000579834},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.42097240686416626},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.41704100370407104},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3427773118019104},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33308976888656616},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1618116796016693},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.12067097425460815},{"id":"https://openalex.org/C43369102","wikidata":"https://www.wikidata.org/wiki/Q2307625","display_name":"Fracture (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059748","descriptor_name":"Proteolysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkr1025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1025","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D351/9474830/gkr1025.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22102574","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22102574","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3244998","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3244998","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D351","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D351","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr1025","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1025","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D351/9474830/gkr1025.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3030655770","display_name":null,"funder_award_id":"Research Chair","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G3969565085","display_name":null,"funder_award_id":"Foundation","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G5265193246","display_name":null,"funder_award_id":"Canada Research Chair","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6282788884","display_name":null,"funder_award_id":"Canadian Institutes of Health","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320311169","display_name":"Cancer Research Society","ror":"https://ror.org/00t38a349"},{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1995283805.pdf","grobid_xml":"https://content.openalex.org/works/W1995283805.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1965179332","https://openalex.org/W1978591675","https://openalex.org/W1983606789","https://openalex.org/W1991380003","https://openalex.org/W1999615477","https://openalex.org/W2004588605","https://openalex.org/W2006786242","https://openalex.org/W2017867429","https://openalex.org/W2025554716","https://openalex.org/W2027763604","https://openalex.org/W2033341544","https://openalex.org/W2041479851","https://openalex.org/W2052337414","https://openalex.org/W2056894234","https://openalex.org/W2060712542","https://openalex.org/W2061945526","https://openalex.org/W2062919894","https://openalex.org/W2065518020","https://openalex.org/W2070852203","https://openalex.org/W2074912245","https://openalex.org/W2079072755","https://openalex.org/W2091273971","https://openalex.org/W2094678200","https://openalex.org/W2096264619","https://openalex.org/W2097033861","https://openalex.org/W2103113681","https://openalex.org/W2104874448","https://openalex.org/W2107249189","https://openalex.org/W2113142309","https://openalex.org/W2122460814","https://openalex.org/W2125810455","https://openalex.org/W2126066807","https://openalex.org/W2136588287","https://openalex.org/W2139750801","https://openalex.org/W2153349010","https://openalex.org/W2155093913","https://openalex.org/W2156179144","https://openalex.org/W2164118220","https://openalex.org/W2170286578","https://openalex.org/W4230724541","https://openalex.org/W4246995357","https://openalex.org/W4320800236"],"related_works":["https://openalex.org/W2288906059","https://openalex.org/W1982829397","https://openalex.org/W2106414650","https://openalex.org/W2347437365","https://openalex.org/W1999412725","https://openalex.org/W4376862128","https://openalex.org/W2124137418","https://openalex.org/W4390205769","https://openalex.org/W4296966554","https://openalex.org/W2391458050"],"abstract_inverted_index":{"Protein":[0],"termini":[1,182,196],"provide":[2],"critical":[3],"insights":[4],"into":[5],"the":[6,25,40,119,127,153,171],"functional":[7],"state":[8],"of":[9,28,45,70,124,130,139,152,165,180],"individual":[10],"proteins.":[11],"With":[12],"recent":[13],"advances":[14],"in":[15,47,177],"specific":[16],"proteomics":[17],"approaches":[18],"to":[19,144,184],"enrich":[20],"for":[21,75],"N-":[22,42],"and":[23,43,49,80,101,104,113,122,135,159,195,200],"C-terminomes,":[24],"global":[26],"analysis":[27],"whole":[29],"terminomes":[30],"at":[31],"a":[32,73,86],"proteome-wide":[33],"scale":[34],"is":[35,59,116],"now":[36],"possible.":[37],"Information":[38],"on":[39,85,118,188],"actual":[41],"C-termini":[44],"proteins":[46],"vivo":[48],"any":[50],"post-translational":[51],"modifications,":[52],"including":[53],"their":[54,157],"generation":[55],"by":[56,191],"proteolytic":[57,82],"processing,":[58],"rapidly":[60],"accumulating.":[61],"To":[62],"access":[63],"this":[64],"information":[65,106,172,183],"we":[66],"present":[67],"version":[68],"2.0":[69],"TopFIND":[71,89,175],"(http://clipserve.clip.ubc.ca/topfind),":[72],"knowledgebase":[74],"protein":[76,181,189,198],"termini,":[77],"terminus":[78,134],"modifications":[79],"underlying":[81],"processing.":[83],"Built":[84],"protein-centric":[87],"framework":[88],"covers":[90],"five":[91],"species:":[92],"Homo":[93],"sapiens,":[94],"Mus":[95],"musculus,":[96],"Arabidopsis":[97],"thaliana,":[98],"Saccharomyces":[99],"cerevisiae":[100],"Escherichia":[102],"coli":[103],"incorporates":[105],"from":[107],"curated":[108],"community":[109],"submissions,":[110],"publications,":[111],"UniProtKB":[112],"MEROPS.":[114],"Emphasis":[115],"placed":[117],"detailed":[120],"description":[121],"classification":[123],"evidence":[125],"supporting":[126,146],"reported":[128],"identification":[129],"each":[131],"cleavage":[132,167,193],"site,":[133],"modification.":[136],"A":[137,148],"suite":[138],"filters":[140],"can":[141],"be":[142],"applied":[143],"select":[145],"evidence.":[147],"dynamic":[149],"network":[150],"representation":[151],"relationship":[154],"between":[155],"proteases,":[156],"substrates":[158],"inhibitors":[160],"as":[161,163],"well":[162],"visualization":[164],"protease":[166],"site":[168],"specificities":[169],"complements":[170],"displayed.":[173],"Hence,":[174],"supports":[176],"depth":[178],"investigation":[179],"spark":[185],"new":[186],"hypotheses":[187],"function":[190],"correlating":[192],"events":[194],"with":[197],"domains":[199],"mutations.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
