{"id":"https://openalex.org/W1983069164","doi":"https://doi.org/10.1093/nar/gkr1022","title":"ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage","display_name":"ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage","publication_year":2011,"publication_date":"2011-11-18","ids":{"openalex":"https://openalex.org/W1983069164","doi":"https://doi.org/10.1093/nar/gkr1022","mag":"1983069164","pmid":"https://pubmed.ncbi.nlm.nih.gov/22102570"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr1022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1022","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D632/9474496/gkr1022.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D632/9474496/gkr1022.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017302403","display_name":"Libusha Kelly","orcid":"https://orcid.org/0000-0002-7303-1022"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Kelly","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090691804","display_name":"Katherine Huang","orcid":"https://orcid.org/0000-0002-5013-4790"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. H. Huang","raw_affiliation_strings":["Department of Civil and Environmental Engineering and 2 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","Department of Civil and Environmental Engineering and 2Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering and 2 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Civil and Environmental Engineering and 2Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011552248","display_name":"Hao Ding","orcid":"https://orcid.org/0000-0002-3058-8197"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Ding","raw_affiliation_strings":["Department of Civil and Environmental Engineering and 2 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","Department of Civil and Environmental Engineering and 2Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering and 2 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Civil and Environmental Engineering and 2Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045427029","display_name":"Sallie W. Chisholm","orcid":"https://orcid.org/0000-0003-1480-2445"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. W. Chisholm","raw_affiliation_strings":["Department of Civil and Environmental Engineering and 2 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","Department of Civil and Environmental Engineering and 2Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering and 2 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Civil and Environmental Engineering and 2Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045427029"],"corresponding_institution_ids":["https://openalex.org/I63966007"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.8475,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.9459366,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"D1","first_page":"D632","last_page":"D640"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prochlorococcus","display_name":"Prochlorococcus","score":0.9836695194244385},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9330185651779175},{"id":"https://openalex.org/keywords/synechococcus","display_name":"Synechococcus","score":0.8212701678276062},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7495404481887817},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6495058536529541},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4987609386444092},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.46958035230636597},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45265430212020874},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4437042474746704},{"id":"https://openalex.org/keywords/metaproteomics","display_name":"Metaproteomics","score":0.43426987528800964},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.424325555562973},{"id":"https://openalex.org/keywords/cyanobacteria","display_name":"Cyanobacteria","score":0.384507417678833},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19223114848136902},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.11619886755943298}],"concepts":[{"id":"https://openalex.org/C2779207893","wikidata":"https://www.wikidata.org/wiki/Q18645284","display_name":"Prochlorococcus","level":5,"score":0.9836695194244385},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9330185651779175},{"id":"https://openalex.org/C2777219426","wikidata":"https://www.wikidata.org/wiki/Q150962","display_name":"Synechococcus","level":4,"score":0.8212701678276062},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7495404481887817},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6495058536529541},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4987609386444092},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.46958035230636597},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45265430212020874},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4437042474746704},{"id":"https://openalex.org/C199465337","wikidata":"https://www.wikidata.org/wiki/Q6823168","display_name":"Metaproteomics","level":4,"score":0.43426987528800964},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.424325555562973},{"id":"https://openalex.org/C2779669040","wikidata":"https://www.wikidata.org/wiki/Q93315","display_name":"Cyanobacteria","level":3,"score":0.384507417678833},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19223114848136902},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.11619886755943298},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D048929","descriptor_name":"Prochlorococcus","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkr1022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1022","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D632/9474496/gkr1022.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22102570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22102570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:osti.gov:1904689","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1904689","pdf_url":"https://www.osti.gov/servlets/purl/1904689","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:dspace.mit.edu:1721.1/72444","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/72444","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Oxford","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D632","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D632","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3245167","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245167","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr1022","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1022","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D632/9474496/gkr1022.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.8899999856948853,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G1796120091","display_name":"MICROBIAL GENE EXPRESSION I THE OCEAN: COMMUNITY GENE FUNCTION AND DYNAMICS REVEALED","funder_award_id":"FG02-07ER64506","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1962169235","display_name":null,"funder_award_id":"DE-FG02-02ER63445","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3048665489","display_name":null,"funder_award_id":"EF0424599","funder_id":"https://openalex.org/F4320306202","funder_display_name":"Gordon and Betty Moore Foundation"},{"id":"https://openalex.org/G3193597784","display_name":"GENOMIC STRUCTURE, METAGENOMICS, HORIZONTAL GENE TRANSFER","funder_award_id":"FG02-08ER64516","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3452348641","display_name":"The Ecology of Prochlorococcus:  Toward a Model System for Microbial Oceanography","funder_award_id":"0425602","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G367941267","display_name":"MICROBIAL ECOLOGY, PROTEOGENO-MICS & COMPUTATIONAL OPTIMA","funder_award_id":"FG02-02ER63445","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3761283143","display_name":null,"funder_award_id":"DE-FG02-02ER63445","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7186324567","display_name":null,"funder_award_id":"DE-FG02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G724606168","display_name":null,"funder_award_id":"EF0424599","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8684078510","display_name":null,"funder_award_id":"DE-FG02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306202","display_name":"Gordon and Betty Moore Foundation","ror":"https://ror.org/006wxqw41"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1983069164.pdf"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W241117969","https://openalex.org/W1519266993","https://openalex.org/W1600348603","https://openalex.org/W1602534227","https://openalex.org/W1964783419","https://openalex.org/W1966952999","https://openalex.org/W1980375642","https://openalex.org/W1987205608","https://openalex.org/W1990118801","https://openalex.org/W1993585018","https://openalex.org/W2002005035","https://openalex.org/W2008264573","https://openalex.org/W2012049965","https://openalex.org/W2035142409","https://openalex.org/W2036815970","https://openalex.org/W2037084529","https://openalex.org/W2043474764","https://openalex.org/W2044151730","https://openalex.org/W2053664446","https://openalex.org/W2055579692","https://openalex.org/W2058617712","https://openalex.org/W2066596168","https://openalex.org/W2070824906","https://openalex.org/W2079115657","https://openalex.org/W2090385974","https://openalex.org/W2093830129","https://openalex.org/W2094015309","https://openalex.org/W2096525273","https://openalex.org/W2098968240","https://openalex.org/W2101662000","https://openalex.org/W2105376428","https://openalex.org/W2105905824","https://openalex.org/W2106925364","https://openalex.org/W2107897969","https://openalex.org/W2109740998","https://openalex.org/W2111980556","https://openalex.org/W2114200698","https://openalex.org/W2115134167","https://openalex.org/W2117086438","https://openalex.org/W2117939087","https://openalex.org/W2119460632","https://openalex.org/W2123412228","https://openalex.org/W2137597742","https://openalex.org/W2137859032","https://openalex.org/W2138985615","https://openalex.org/W2142561581","https://openalex.org/W2143573510","https://openalex.org/W2146152803","https://openalex.org/W2149545078","https://openalex.org/W2149577489","https://openalex.org/W2150690480","https://openalex.org/W2153673486","https://openalex.org/W2158062455","https://openalex.org/W2158318001","https://openalex.org/W2161017872","https://openalex.org/W2165335121","https://openalex.org/W2167368612","https://openalex.org/W2169020438","https://openalex.org/W2171039375","https://openalex.org/W2260426029","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W1978886837","https://openalex.org/W2142021629","https://openalex.org/W3150555100","https://openalex.org/W2406277324","https://openalex.org/W2776666304","https://openalex.org/W1995233033","https://openalex.org/W2553382436","https://openalex.org/W2085615216","https://openalex.org/W4240094338","https://openalex.org/W1546281767"],"abstract_inverted_index":{"ProPortal":[0],"(http://proportal.mit.edu/)":[1],"is":[2,19,199],"a":[3,22,98,147,160],"database":[4],"containing":[5],"genomic,":[6],"metagenomic,":[7],"transcriptomic":[8],"and":[9,52,70,81,111,121,173],"field":[10,198],"data":[11,26,116,195],"for":[12,117],"the":[13,33,36,38,61,140,152,166,182,197],"marine":[14],"cyanobacterium":[15],"Prochlorococcus.":[16],"Our":[17],"goal":[18],"to":[20,35,125,135],"provide":[21],"source":[23],"of":[24,30,41,63,154,192],"cross-referenced":[25],"across":[27],"multiple":[28],"scales":[29],"biological":[31],"organization--from":[32],"genome":[34,99],"ecosystem--embracing":[37],"full":[39],"diversity":[40],"ecotypic":[42],"variation":[43],"within":[44],"this":[45],"microbial":[46],"taxon,":[47],"its":[48],"sister":[49],"group,":[50],"Synechococcus":[51,68,172],"phage":[53,174],"that":[54,74,89,128],"infect":[55,75],"them.":[56],"The":[57],"site":[58],"currently":[59],"contains":[60],"genomes":[62,175],"13":[64],"Prochlorococcus":[65,118],"strains,":[66],"11":[67],"strains":[69,73],"28":[71],"cyanophage":[72,82,112],"one":[76],"or":[77,96,131],"both":[78],"groups.":[79],"Cyanobacterial":[80],"genes":[83,127],"are":[84,129,176],"clustered":[85],"into":[86],"orthologous":[87,105],"groups":[88],"can":[90,102,180],"be":[91],"accessed":[92],"by":[93,109],"keyword":[94],"search":[95],"through":[97],"browser.":[100],"Users":[101],"also":[103],"identify":[104,126],"gene":[106,155],"clusters":[107],"shared":[108],"cyanobacterial":[110,193],"genomes.":[113],"Gene":[114],"expression":[115,156],"ecotypes":[119],"MED4":[120],"MIT9313":[122],"allow":[123],"users":[124,179],"up":[130],"downregulated":[132],"in":[133,142,157,159],"response":[134],"environmental":[136],"stressors.":[137],"In":[138],"addition,":[139],"transcriptome":[141],"synchronized":[143],"cells":[144,158],"grown":[145],"on":[146],"24-h":[148],"light-dark":[149],"cycle":[150],"reveals":[151],"choreography":[153],"'natural'":[161],"state.":[162],"Metagenomic":[163],"sequences":[164],"from":[165,170,186,196],"Global":[167],"Ocean":[168],"Survey":[169],"Prochlorococcus,":[171],"archived":[177],"so":[178],"examine":[181],"differences":[183],"between":[184],"populations":[185],"diverse":[187],"habitats.":[188],"Finally,":[189],"an":[190],"example":[191],"population":[194],"included.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
