{"id":"https://openalex.org/W2018740272","doi":"https://doi.org/10.1093/nar/gkr1011","title":"STITCH 3: zooming in on protein-chemical interactions","display_name":"STITCH 3: zooming in on protein-chemical interactions","publication_year":2011,"publication_date":"2011-11-09","ids":{"openalex":"https://openalex.org/W2018740272","doi":"https://doi.org/10.1093/nar/gkr1011","mag":"2018740272","pmid":"https://pubmed.ncbi.nlm.nih.gov/22075997"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkr1011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1011","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D876/9473435/gkr1011.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/D1/D876/9473435/gkr1011.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083798629","display_name":"Michael Kuhn","orcid":"https://orcid.org/0000-0002-2841-872X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["CH","DE"],"is_corresponding":true,"raw_author_name":"M. Kuhn","raw_affiliation_strings":["Biotechnology Center, TU Dresden, 01062 Dresden, Germany. bork@embl.de","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, TU Dresden, 01062 Dresden, Germany. bork@embl.de","institution_ids":["https://openalex.org/I78650965"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061581536","display_name":"Damian Szklarczyk","orcid":"https://orcid.org/0000-0002-4052-5069"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"D. Szklarczyk","raw_affiliation_strings":["Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210153543"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031818843","display_name":"Andrea Franceschini","orcid":"https://orcid.org/0009-0008-7282-6975"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"A. Franceschini","raw_affiliation_strings":["Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210153543"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000334281","display_name":"Christian von Mering","orcid":"https://orcid.org/0000-0001-7734-9102"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"C. von Mering","raw_affiliation_strings":["Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210153543"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005772961","display_name":"Lars Juhl Jensen","orcid":"https://orcid.org/0000-0001-7885-715X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"L. J. Jensen","raw_affiliation_strings":["Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210153543"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074309419","display_name":"Peer Bork","orcid":"https://orcid.org/0000-0002-2627-833X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["CH","DE"],"is_corresponding":true,"raw_author_name":"P. Bork","raw_affiliation_strings":["Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Center, TU Dresden, 01062 Dresden, Germany, 2 Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, 3 Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, 4 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and 5 Max-Delbr\u00fcck-Centre for Molecular Medicine, Robert-R\u00f6ssle-Strasse 10, 13092 Berlin, Germany","institution_ids":["https://openalex.org/I4210153543"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5074309419","https://openalex.org/A5083798629"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I4210153543","https://openalex.org/I78650965"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":29.0822,"has_fulltext":true,"cited_by_count":279,"citation_normalized_percentile":{"value":0.99817618,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"40","issue":"D1","first_page":"D876","last_page":"D880"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5508643388748169},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5469446778297424},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.5329253077507019},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4782801568508148},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.46800604462623596},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.4375843405723572},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.42849215865135193},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.371589720249176},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3671116232872009},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27506813406944275},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24849683046340942},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1501528024673462},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12623894214630127}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5508643388748169},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5469446778297424},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.5329253077507019},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4782801568508148},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.46800604462623596},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.4375843405723572},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.42849215865135193},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.371589720249176},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3671116232872009},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27506813406944275},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24849683046340942},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1501528024673462},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12623894214630127},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001669","descriptor_name":"Biochemical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013237","descriptor_name":"Stereoisomerism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013237","descriptor_name":"Stereoisomerism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013237","descriptor_name":"Stereoisomerism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkr1011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1011","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D876/9473435/gkr1011.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22075997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22075997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3245073","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3245073","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:edoc.mdc-berlin.de:12317","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.728.4938","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.728.4938","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.imls.uzh.ch/research/vonmering/publ/22075997.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.884.9624","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.884.9624","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2011/11/09/nar.gkr1011.full.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/D1/D876","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/D1/D876","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/f528c2ec-d881-41f3-aff4-c06d90d9e792","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/f528c2ec-d881-41f3-aff4-c06d90d9e792","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kuhn , M , Szklarczyk , D , Franceschini , A , von Mering , C , Jensen , L J & Bork , P 2012 , ' STITCH 3 : zooming in on protein-chemical interactions ' , Nucleic Acids Research , vol. 40 , no. Database issue , pp. D876-80 . https://doi.org/10.1093/nar/gkr1011","raw_type":"article"},{"id":"doi:10.5167/uzh-51140","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-51140","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/nar/gkr1011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkr1011","pdf_url":"https://academic.oup.com/nar/article-pdf/40/D1/D876/9473435/gkr1011.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2018740272.pdf","grobid_xml":"https://content.openalex.org/works/W2018740272.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1971315259","https://openalex.org/W1994306321","https://openalex.org/W2007287574","https://openalex.org/W2009313526","https://openalex.org/W2010519792","https://openalex.org/W2023947478","https://openalex.org/W2028133290","https://openalex.org/W2034537627","https://openalex.org/W2057545775","https://openalex.org/W2064154425","https://openalex.org/W2069676201","https://openalex.org/W2096525273","https://openalex.org/W2096541451","https://openalex.org/W2096864392","https://openalex.org/W2108069034","https://openalex.org/W2115086145","https://openalex.org/W2127553917","https://openalex.org/W2128601422","https://openalex.org/W2130479394","https://openalex.org/W2131347449","https://openalex.org/W2136640051","https://openalex.org/W2136740706","https://openalex.org/W2137052779","https://openalex.org/W2142572836","https://openalex.org/W2156930958","https://openalex.org/W2171437346","https://openalex.org/W4233060585","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W2788595494","https://openalex.org/W2244676099","https://openalex.org/W3172556642","https://openalex.org/W3157456843","https://openalex.org/W1990150827","https://openalex.org/W2036676347","https://openalex.org/W1589307369","https://openalex.org/W3165790285","https://openalex.org/W3144351989","https://openalex.org/W2091972240"],"abstract_inverted_index":{"To":[0],"facilitate":[1],"the":[2,32,35,42,84,89,129,132,150],"study":[3],"of":[4,17,37,44,96,101,117],"interactions":[5,18,40,46,61],"between":[6,93],"proteins":[7,26],"and":[8,23,41,77,125,137],"chemicals,":[9],"we":[10,87],"have":[11],"created":[12],"STITCH,":[13],"an":[14,63,78,81],"aggregated":[15],"database":[16,51,153],"connecting":[19],"over":[20],"300,000":[21],"chemicals":[22,38],"2.6":[24],"million":[25],"from":[27],"1133":[28],"organisms.":[29],"Compared":[30],"to":[31,91,146],"previous":[33],"version,":[34,86],"number":[36,43],"with":[39],"high-confidence":[45],"both":[47],"increase":[48],"4-fold.":[49],"The":[50,152],"can":[52],"be":[53],"accessed":[54],"interactively":[55],"through":[56,74,140],"a":[57,102,108],"web":[58],"interface,":[59],"displaying":[60],"in":[62,83],"integrated":[64],"network":[65],"view.":[66],"It":[67],"is":[68,119,154],"also":[69],"available":[70],"for":[71,121,123],"computational":[72],"studies":[73],"downloadable":[75],"files":[76],"API.":[79],"As":[80],"extension":[82],"current":[85],"offer":[88],"option":[90],"switch":[92],"two":[94],"levels":[95],"detail,":[97],"namely":[98],"whether":[99],"stereoisomers":[100,118],"given":[103],"compound":[104],"are":[105],"shown":[106],"as":[107,112,134],"merged":[109],"entity":[110],"or":[111],"separate":[113],"entities.":[114],"Separate":[115],"display":[116],"necessary,":[120],"example,":[122],"carbohydrates":[124],"chiral":[126],"drugs.":[127],"Combining":[128],"isomers":[130],"increases":[131],"coverage,":[133],"interaction":[135],"databases":[136],"publications":[138],"found":[139],"text":[141],"mining":[142],"will":[143],"often":[144],"refer":[145],"compounds":[147],"without":[148],"specifying":[149],"stereoisomer.":[151],"accessible":[155],"at":[156],"http://stitch.embl.de/.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":23},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":36},{"year":2014,"cited_by_count":41},{"year":2013,"cited_by_count":45},{"year":2012,"cited_by_count":12}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
