{"id":"https://openalex.org/W2039490778","doi":"https://doi.org/10.1093/nar/gkq971","title":"WebGeSTer DB\u2014a transcription terminator database","display_name":"WebGeSTer DB\u2014a transcription terminator database","publication_year":2010,"publication_date":"2010-10-23","ids":{"openalex":"https://openalex.org/W2039490778","doi":"https://doi.org/10.1093/nar/gkq971","mag":"2039490778","pmid":"https://pubmed.ncbi.nlm.nih.gov/20972211"},"language":"de","primary_location":{"id":"doi:10.1093/nar/gkq971","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq971","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D129/18788630/gkq971.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D129/18788630/gkq971.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001560268","display_name":"Anirban P. Mitra","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Anirban Mitra","raw_affiliation_strings":["Department of Microbiology Cell Biology, Indian Institute of Science and Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology Cell Biology, Indian Institute of Science and Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018196204","display_name":"Anil K Kesarwani","orcid":null},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]},{"id":"https://openalex.org/I147481903","display_name":"Jawaharlal Nehru Centre for Advanced Scientific Research","ror":"https://ror.org/0538gdx71","country_code":"IN","type":"facility","lineage":["https://openalex.org/I147481903","https://openalex.org/I2799351866","https://openalex.org/I4210098748","https://openalex.org/I4210134808"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anil K. Kesarwani","raw_affiliation_strings":["Bioinformatics Centre, Indian Institute of Science and","Department of Microbiology Cell Biology, 2 Bioinformatics Centre, Indian Institute of Science and 3 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, Indian Institute of Science and","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Department of Microbiology Cell Biology, 2 Bioinformatics Centre, Indian Institute of Science and 3 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India","institution_ids":["https://openalex.org/I147481903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026479756","display_name":"Debnath Pal","orcid":"https://orcid.org/0000-0002-3591-5978"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]},{"id":"https://openalex.org/I147481903","display_name":"Jawaharlal Nehru Centre for Advanced Scientific Research","ror":"https://ror.org/0538gdx71","country_code":"IN","type":"facility","lineage":["https://openalex.org/I147481903","https://openalex.org/I2799351866","https://openalex.org/I4210098748","https://openalex.org/I4210134808"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Debnath Pal","raw_affiliation_strings":["Bioinformatics Centre, Indian Institute of Science and","Department of Microbiology Cell Biology, 2 Bioinformatics Centre, Indian Institute of Science and 3 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, Indian Institute of Science and","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Department of Microbiology Cell Biology, 2 Bioinformatics Centre, Indian Institute of Science and 3 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India","institution_ids":["https://openalex.org/I147481903"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006030743","display_name":"Valakunja Nagaraja","orcid":"https://orcid.org/0000-0002-3298-8741"},"institutions":[{"id":"https://openalex.org/I147481903","display_name":"Jawaharlal Nehru Centre for Advanced Scientific Research","ror":"https://ror.org/0538gdx71","country_code":"IN","type":"facility","lineage":["https://openalex.org/I147481903","https://openalex.org/I2799351866","https://openalex.org/I4210098748","https://openalex.org/I4210134808"]},{"id":"https://openalex.org/I4210155364","display_name":"Institute of Cell Biology","ror":"https://ror.org/04fg7fb49","country_code":"UA","type":"facility","lineage":["https://openalex.org/I149851306","https://openalex.org/I4210155364"]}],"countries":["IN","UA"],"is_corresponding":false,"raw_author_name":"Valakunja Nagaraja","raw_affiliation_strings":["Department of Microbiology Cell Biology,","Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India","Department of Microbiology Cell Biology, 2 Bioinformatics Centre, Indian Institute of Science and 3 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology Cell Biology,","institution_ids":["https://openalex.org/I4210155364"]},{"raw_affiliation_string":"Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India","institution_ids":["https://openalex.org/I147481903"]},{"raw_affiliation_string":"Department of Microbiology Cell Biology, 2 Bioinformatics Centre, Indian Institute of Science and 3 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India","institution_ids":["https://openalex.org/I147481903"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001560268"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4909,"has_fulltext":true,"cited_by_count":106,"citation_normalized_percentile":{"value":0.81077549,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"suppl_1","first_page":"D129","last_page":"D135"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8228837847709656},{"id":"https://openalex.org/keywords/terminator","display_name":"Terminator (solar)","score":0.6914039850234985},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6523809432983398},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.5615247488021851},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5460373163223267},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.532272458076477},{"id":"https://openalex.org/keywords/plasmid","display_name":"Plasmid","score":0.5055623054504395},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4519580900669098},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.44247323274612427},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.42349132895469666},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1562090814113617}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8228837847709656},{"id":"https://openalex.org/C178046730","wikidata":"https://www.wikidata.org/wiki/Q331824","display_name":"Terminator (solar)","level":3,"score":0.6914039850234985},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6523809432983398},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.5615247488021851},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5460373163223267},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.532272458076477},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.5055623054504395},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4519580900669098},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.44247323274612427},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.42349132895469666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1562090814113617},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C116403925","wikidata":"https://www.wikidata.org/wiki/Q162219","display_name":"Ionosphere","level":2,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D013728","descriptor_name":"Terminator Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013728","descriptor_name":"Terminator Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013728","descriptor_name":"Terminator Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq971","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq971","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D129/18788630/gkq971.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20972211","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20972211","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:eprints.iisc.ac.in:36180","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196309","display_name":"NOT FOUND REPOSITORY (Indian Institute of Science Bangalore)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59270414","host_organization_name":"Indian Institute of Science Bangalore","host_organization_lineage":["https://openalex.org/I59270414"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3013805","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013805","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq971","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq971","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D129/18788630/gkq971.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2039490778.pdf","grobid_xml":"https://content.openalex.org/works/W2039490778.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1508972499","https://openalex.org/W1512810258","https://openalex.org/W1602283030","https://openalex.org/W1938580616","https://openalex.org/W1970103400","https://openalex.org/W1974956446","https://openalex.org/W1975471922","https://openalex.org/W1987568156","https://openalex.org/W2001213207","https://openalex.org/W2005436483","https://openalex.org/W2005886789","https://openalex.org/W2011514421","https://openalex.org/W2016862843","https://openalex.org/W2023135381","https://openalex.org/W2024533976","https://openalex.org/W2032761794","https://openalex.org/W2069420108","https://openalex.org/W2092233856","https://openalex.org/W2099577127","https://openalex.org/W2106282287","https://openalex.org/W2107564642","https://openalex.org/W2120900330","https://openalex.org/W2128104161","https://openalex.org/W2138762386","https://openalex.org/W2144539964","https://openalex.org/W2170323088","https://openalex.org/W2170839158","https://openalex.org/W6630454191"],"related_works":["https://openalex.org/W2889029343","https://openalex.org/W2079327011","https://openalex.org/W2056973287","https://openalex.org/W3111025641","https://openalex.org/W2061340009","https://openalex.org/W3202542829","https://openalex.org/W1965562485","https://openalex.org/W1956137100","https://openalex.org/W2340204314","https://openalex.org/W2046657386"],"abstract_inverted_index":{"We":[0],"present":[1],"WebGeSTer":[2],"DB,":[3],"the":[4,57,68,73,78,82,97,110,113],"largest":[5],"database":[6,13,111,128],"of":[7,15,70,77,91,99],"intrinsic":[8,116],"transcription":[9],"terminators":[10,18,38,71,89,103],"(http://pallab.serc.iisc.ernet.in/gester).":[11],"The":[12,45,107],"comprises":[14],"a":[16,119],"million":[17],"identified":[19],"in":[20,49,109,125],"1060":[21],"bacterial":[22],"genome":[23],"sequences":[24],"and":[25,33,85,101,121],"798":[26],"plasmids.":[27],"Users":[28],"can":[29],"obtain":[30],"both":[31,80],"graphic":[32],"tabular":[34],"results":[35,46],"on":[36,40],"putative":[37],"based":[39],"default":[41],"or":[42],"user-defined":[43],"parameters.":[44],"are":[47],"arranged":[48],"different":[50,105],"tiers":[51],"to":[52,66,88],"facilitate":[53],"retrieval,":[54],"as":[55],"per":[56],"specific":[58,92],"requirements.":[59],"An":[60],"interactive":[61],"map":[62],"has":[63],"been":[64],"incorporated":[65],"visualize":[67],"distribution":[69],"across":[72,104],"whole":[74],"genome.":[75],"Analysis":[76],"results,":[79],"at":[81],"whole-genome":[83],"level":[84],"with":[86],"respect":[87],"downstream":[90],"genes,":[93],"offers":[94],"insight":[95],"into":[96],"prevalence":[98],"canonical":[100],"non-canonical":[102],"phyla.":[106],"data":[108],"reinforce":[112],"paradigm":[114],"that":[115],"termination":[117],"is":[118,129],"conserved":[120],"efficient":[122],"regulatory":[123],"mechanism":[124],"bacteria.":[126],"Our":[127],"freely":[130],"accessible.":[131]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
