{"id":"https://openalex.org/W2160307218","doi":"https://doi.org/10.1093/nar/gkq888","title":"IEDB-3D: structural data within the immune epitope database","display_name":"IEDB-3D: structural data within the immune epitope database","publication_year":2010,"publication_date":"2010-10-28","ids":{"openalex":"https://openalex.org/W2160307218","doi":"https://doi.org/10.1093/nar/gkq888","mag":"2160307218","pmid":"https://pubmed.ncbi.nlm.nih.gov/21030437"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq888","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq888","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1164/7637075/gkq888.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1164/7637075/gkq888.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070141127","display_name":"Julia Ponomarenko","orcid":"https://orcid.org/0000-0002-1477-9444"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I6750721","display_name":"University of Montana","ror":"https://ror.org/0078xmk34","country_code":"US","type":"education","lineage":["https://openalex.org/I6750721"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Ponomarenko","raw_affiliation_strings":["San Diego Supercomputer Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093, USA. jpon@sdsc.edu","San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093, USA. jpon@sdsc.edu","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I6750721"]},{"raw_affiliation_string":"San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959","https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042342143","display_name":"Nikitas Papangelopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Papangelopoulos","raw_affiliation_strings":["San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959","https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048766408","display_name":"Dirk M. Zajonc","orcid":"https://orcid.org/0000-0001-7215-1981"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. M. Zajonc","raw_affiliation_strings":["San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959","https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Peters","raw_affiliation_strings":["San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959","https://openalex.org/I181653535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111619312","display_name":"A Sette","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Sette","raw_affiliation_strings":["San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959","https://openalex.org/I181653535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075833022","display_name":"Philip E. Bourne","orcid":"https://orcid.org/0000-0002-7618-7292"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. E. Bourne","raw_affiliation_strings":["San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, 2 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, CA 92093 and 3 La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959","https://openalex.org/I181653535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070141127"],"corresponding_institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I181653535","https://openalex.org/I36258959","https://openalex.org/I6750721"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4971,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.81947341,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"39","issue":"Database","first_page":"D1164","last_page":"D1170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.6635921001434326},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6058741807937622},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5759926438331604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47653278708457947},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.42792731523513794},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34595757722854614},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3407447934150696},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19123750925064087},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.1772502362728119},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.10893416404724121}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.6635921001434326},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6058741807937622},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5759926438331604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47653278708457947},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.42792731523513794},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34595757722854614},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3407447934150696},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19123750925064087},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.1772502362728119},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.10893416404724121},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkq888","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq888","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1164/7637075/gkq888.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21030437","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21030437","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:ark:/13030/qt1ft2565z","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1010.7932","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1010.7932","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/39/suppl_1/D1164.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1013.2931","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1013.2931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/10/27/nar.gkq888.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1030.2232","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1030.2232","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/10/27/nar.gkq888.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1033.8535","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1033.8535","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/39/suppl_1/D1164.full.pdf","raw_type":"text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1ft2565z","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1ft2565z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 39, iss Database issue","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3013771","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013771","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq888","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq888","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1164/7637075/gkq888.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2160307218.pdf"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1535117461","https://openalex.org/W1957227954","https://openalex.org/W1979874740","https://openalex.org/W1982754172","https://openalex.org/W2000861313","https://openalex.org/W2002520327","https://openalex.org/W2028339001","https://openalex.org/W2047994201","https://openalex.org/W2130479394","https://openalex.org/W2137575262"],"related_works":["https://openalex.org/W2020669016","https://openalex.org/W2088162897","https://openalex.org/W2090630809","https://openalex.org/W2106612397","https://openalex.org/W4387804157","https://openalex.org/W2518314460","https://openalex.org/W2589205199","https://openalex.org/W2119891507","https://openalex.org/W2089869950","https://openalex.org/W2047544230"],"abstract_inverted_index":{"IEDB-3D":[0,22,90,109],"is":[1,110],"the":[2,7,14,50,107,154,168],"3D":[3,17,36],"structural":[4,117,173],"component":[5],"of":[6,38,61,153],"Immune":[8],"Epitope":[9],"Database":[10],"(IEDB)":[11],"available":[12,48],"via":[13],"'Browse":[15],"by":[16,150],"Structure'":[18],"page":[19],"at":[20],"http://www.iedb.org.":[21],"catalogs":[23],"B-":[24],"and":[25,28,64,82,97,100,121,123,148,177],"T-cell":[26,42],"epitopes":[27,68,138],"Major":[29],"Histocompatibility":[30],"Complex":[31],"(MHC)":[32],"ligands":[33],"for":[34,137],"which":[35],"structures":[37,63],"complexes":[39],"with":[40,78,172],"antibodies,":[41],"receptors":[43],"or":[44,167,185],"MHC":[45],"molecules":[46],"are":[47,58,69],"in":[49,140,163,182],"Protein":[51],"Data":[52],"Bank":[53],"(PDB).":[54],"Journal":[55],"articles":[56],"that":[57,65],"primary":[59],"citations":[60],"PDB":[62],"define":[66],"immune":[67,146,155],"curated":[70,88,120,176],"within":[71,113],"IEDB":[72],"as":[73],"any":[74],"other":[75],"reference":[76],"along":[77],"accompanying":[79,125],"functional":[80,145],"assays":[81],"immunologically":[83],"relevant":[84],"information.":[85],"For":[86],"each":[87],"structure,":[89],"provides":[91],"calculated":[92],"data":[93,174],"on":[94],"intermolecular":[95],"contacts":[96],"interface":[98],"areas":[99],"includes":[101],"an":[102],"application,":[103],"EpitopeViewer,":[104],"to":[105,127],"visualize":[106],"structures.":[108],"fully":[111],"embedded":[112],"IEDB,":[114],"thus":[115],"allowing":[116],"data,":[118],"both":[119,175],"calculated,":[122,178],"all":[124],"information":[126],"be":[128,161,180],"queried":[129],"using":[130],"multiple":[131],"search":[132],"interfaces.":[133],"These":[134],"include":[135],"queries":[136],"recognized":[139,149],"different":[141,144,151],"pathogens,":[142],"eliciting":[143],"responses,":[147],"components":[152],"system.":[156],"The":[157],"query":[158],"results":[159],"can":[160,179],"downloaded":[162,181],"Microsoft":[164],"Excel":[165],"format,":[166],"entire":[169],"database,":[170],"together":[171],"either":[183],"XML":[184],"MySQL":[186],"formats.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
