{"id":"https://openalex.org/W2170382524","doi":"https://doi.org/10.1093/nar/gkq869","title":"Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes","display_name":"Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes","publication_year":2010,"publication_date":"2010-10-06","ids":{"openalex":"https://openalex.org/W2170382524","doi":"https://doi.org/10.1093/nar/gkq869","mag":"2170382524","pmid":"https://pubmed.ncbi.nlm.nih.gov/20929876"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq869","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq869","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D596/7636314/gkq869.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D596/7636314/gkq869.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062211058","display_name":"Geoffrey L. Winsor","orcid":"https://orcid.org/0000-0001-6848-1638"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"G. L. Winsor","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111970144","display_name":"Daniel Lam","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"D. K. W. Lam","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013346591","display_name":"Louise Fleming","orcid":"https://orcid.org/0000-0002-7268-7433"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"L. Fleming","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112984712","display_name":"R Y Lo","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"R. Lo","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005752445","display_name":"Matthew D. Whiteside","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M. D. Whiteside","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019081847","display_name":"Nancy Yu","orcid":"https://orcid.org/0000-0001-8321-8141"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"N. Y. Yu","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066530115","display_name":"Robert E. W. Hancock","orcid":"https://orcid.org/0000-0001-5989-8503"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"R. E. W. Hancock","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050197558","display_name":"Fiona S. L. Brinkman","orcid":"https://orcid.org/0000-0002-0584-4099"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"F. S. L. Brinkman","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC V5A 1S6 and 2 Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada","institution_ids":["https://openalex.org/I18014758","https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5062211058"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I18014758"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":17.8914,"has_fulltext":true,"cited_by_count":617,"citation_normalized_percentile":{"value":0.99589328,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"39","issue":"Database","first_page":"D596","last_page":"D600"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8451967239379883},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.824660062789917},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.7592620253562927},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.691620409488678},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5199897885322571},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5193915963172913},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5134969353675842},{"id":"https://openalex.org/keywords/population-genomics","display_name":"Population genomics","score":0.5011003017425537},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.47714492678642273},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4056841731071472}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8451967239379883},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.824660062789917},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.7592620253562927},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.691620409488678},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5199897885322571},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5193915963172913},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5134969353675842},{"id":"https://openalex.org/C2779040068","wikidata":"https://www.wikidata.org/wiki/Q7229807","display_name":"Population genomics","level":5,"score":0.5011003017425537},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.47714492678642273},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4056841731071472},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkq869","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq869","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D596/7636314/gkq869.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20929876","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20929876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3013766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013766","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq869","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq869","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D596/7636314/gkq869.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323326","display_name":"Medizinischen Hochschule Hannover","ror":"https://ror.org/00f2yqf98"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170382524.pdf","grobid_xml":"https://content.openalex.org/works/W2170382524.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1542595575","https://openalex.org/W1553112231","https://openalex.org/W1561084015","https://openalex.org/W1602927283","https://openalex.org/W1984345785","https://openalex.org/W1996423252","https://openalex.org/W2011586678","https://openalex.org/W2036335453","https://openalex.org/W2048878566","https://openalex.org/W2055109879","https://openalex.org/W2068651456","https://openalex.org/W2096525273","https://openalex.org/W2098429327","https://openalex.org/W2107282968","https://openalex.org/W2108671185","https://openalex.org/W2109295007","https://openalex.org/W2110670805","https://openalex.org/W2119158206","https://openalex.org/W2121621283","https://openalex.org/W2122732537","https://openalex.org/W2123060905","https://openalex.org/W2129978006","https://openalex.org/W2131581981","https://openalex.org/W2133425351","https://openalex.org/W2139627484","https://openalex.org/W2140498399","https://openalex.org/W2145477956","https://openalex.org/W2147428258","https://openalex.org/W2149353640","https://openalex.org/W2152193238","https://openalex.org/W2154202919","https://openalex.org/W2154454968","https://openalex.org/W2155954664","https://openalex.org/W2155991374","https://openalex.org/W2161062388","https://openalex.org/W2162792752","https://openalex.org/W2163783674","https://openalex.org/W2165913026","https://openalex.org/W2166135736","https://openalex.org/W2167120169","https://openalex.org/W2168546553","https://openalex.org/W4211000692","https://openalex.org/W4231041617","https://openalex.org/W4248664566","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2036948647","https://openalex.org/W3113639865","https://openalex.org/W2752117239","https://openalex.org/W2939866924","https://openalex.org/W4233657210","https://openalex.org/W1493660383","https://openalex.org/W2435275176","https://openalex.org/W1565527690","https://openalex.org/W1560725704","https://openalex.org/W2129833142"],"abstract_inverted_index":{"Pseudomonas":[0,25,31,99,159,167,185],"is":[1],"a":[2,19,105,173],"metabolically-diverse":[3],"genus":[4],"of":[5,22,74,95,179],"bacteria":[6],"known":[7],"for":[8,97,109,143,153,184,195],"its":[9],"flexibility":[10],"and":[11,34,42,67,81,89,101,122,145,157],"leading":[12],"free":[13],"living":[14],"to":[15,53,128,171],"pathogenic":[16],"lifestyles":[17],"in":[18,57],"wide":[20,93],"range":[21,94],"hosts.":[23],"The":[24,47,92,166],"Genome":[26,168],"Database":[27,169],"(http://www.pseudomonas.com)":[28],"integrates":[29],"completely-sequenced":[30],"genome":[32,180],"sequences":[33,102],"their":[35],"annotations":[36,100],"with":[37],"genome-scale,":[38],"high-precision":[39],"computational":[40,113],"predictions":[41,114],"manually":[43],"curated":[44],"annotation":[45],"updates.":[46],"latest":[48],"release":[49],"implements":[50],"an":[51,189],"ability":[52],"view":[54],"sequence":[55],"polymorphisms":[56],"P.":[58],"aeruginosa":[59],"PAO1":[60],"versus":[61],"other":[62,196],"reference":[63],"strains,":[64,82],"incomplete":[65],"genomes":[66],"single":[68],"gene":[69],"sequences.":[70],"This":[71],"aids":[72],"analysis":[73],"phenotypic":[75],"variation":[76],"between":[77],"closely":[78],"related":[79],"isolates":[80],"as":[83,85,132,134],"well":[84,133],"wider":[86],"population":[87],"genomics":[88,136],"evolutionary":[90,164],"studies.":[91],"tools":[96],"comparing":[98],"now":[103],"includes":[104],"strain-specific":[106],"access":[107],"point":[108],"viewing":[110],"high":[111,176],"precision":[112],"including":[115],"updated,":[116,175],"more":[117],"accurate,":[118],"protein":[119],"subcellular":[120],"localization":[121],"genomic":[123],"island":[124],"predictions.":[125],"Views":[126],"link":[127],"genome-scale":[129],"experimental":[130],"data":[131],"comparative":[135],"analyses":[137,149],"that":[138,191],"incorporate":[139],"robust":[140],"genera-geared":[141],"methods":[142],"predicting":[144],"clustering":[146],"orthologs.":[147],"These":[148],"can":[150],"be":[151,193],"exploited":[152],"identifying":[154,162],"putative":[155],"essential":[156],"core":[158],"genes":[160],"or":[161],"large-scale":[163],"events.":[165],"aims":[170],"provide":[172],"continually":[174],"quality":[177],"source":[178],"annotations,":[181],"specifically":[182],"tailored":[183],"researchers,":[186],"but":[187],"using":[188],"approach":[190],"may":[192],"implemented":[194],"genera-level":[197],"research":[198],"communities.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":41},{"year":2016,"cited_by_count":77},{"year":2015,"cited_by_count":101},{"year":2014,"cited_by_count":126},{"year":2013,"cited_by_count":86},{"year":2012,"cited_by_count":43}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}