{"id":"https://openalex.org/W1975992663","doi":"https://doi.org/10.1093/nar/gkq858","title":"FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system","display_name":"FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system","publication_year":2010,"publication_date":"2010-11-19","ids":{"openalex":"https://openalex.org/W1975992663","doi":"https://doi.org/10.1093/nar/gkq858","mag":"1975992663","pmid":"https://pubmed.ncbi.nlm.nih.gov/21097781"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq858","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq858","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D111/18787760/gkq858.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D111/18787760/gkq858.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070760688","display_name":"Lihua Julie Zhu","orcid":"https://orcid.org/0000-0001-7416-0590"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lihua Julie Zhu","raw_affiliation_strings":["Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA","Department of Molecular Medicine University of Massachusetts Medical School Worcester MA USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992"]},{"raw_affiliation_string":"Department of Molecular Medicine University of Massachusetts Medical School Worcester MA USA","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008989256","display_name":"Ryan Christensen","orcid":"https://orcid.org/0000-0002-1317-091X"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan G. Christensen","raw_affiliation_strings":["Department of Genetics, Washington University School of Medicine, St Louis, MO,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Washington University School of Medicine, St Louis, MO,","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036588904","display_name":"Majid Kazemian","orcid":"https://orcid.org/0000-0001-7080-8820"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Majid Kazemian","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign, IL,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, IL,","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068378353","display_name":"C.J. Hull","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Hull","raw_affiliation_strings":["Information Services, University of Massachusetts Medical School, Worcester, MA,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Information Services, University of Massachusetts Medical School, Worcester, MA,","institution_ids":["https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002770603","display_name":"Metewo Selase Enuameh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Metewo Selase Enuameh","raw_affiliation_strings":["Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058066036","display_name":"Matthew D. Basciotta","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew D. Basciotta","raw_affiliation_strings":["Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020975715","display_name":"Jessie A. Brasefield","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessie A. Brasefield","raw_affiliation_strings":["Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032846269","display_name":"Cong Zhu","orcid":"https://orcid.org/0000-0001-9687-6653"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cong Zhu","raw_affiliation_strings":["Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083290150","display_name":"Yuna Asriyan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuna Asriyan","raw_affiliation_strings":["Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032686697","display_name":"David Lapointe","orcid":"https://orcid.org/0000-0002-9697-0399"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David S. Lapointe","raw_affiliation_strings":["Information Services, University of Massachusetts Medical School, Worcester, MA,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Information Services, University of Massachusetts Medical School, Worcester, MA,","institution_ids":["https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101657008","display_name":"Saurabh Sinha","orcid":"https://orcid.org/0000-0001-6033-7746"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saurabh Sinha","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign, IL,","Institute of Genomic Biology, University of Illinois at Urbana-Champaign, IL and","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, IL,","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Institute of Genomic Biology, University of Illinois at Urbana-Champaign, IL and","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014288520","display_name":"Scot A. Wolfe","orcid":"https://orcid.org/0000-0002-7042-201X"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scot A. Wolfe","raw_affiliation_strings":["Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA","Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA, USA","institution_ids":["https://openalex.org/I166722992"]},{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028527852","display_name":"Michael H. Brodsky","orcid":"https://orcid.org/0000-0001-7703-4872"},"institutions":[{"id":"https://openalex.org/I4210099679","display_name":"Protein Express (United States)","ror":"https://ror.org/013vgsx18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210099679"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael H. Brodsky","raw_affiliation_strings":["Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA,","Program in Gene Function and Expression, University of Massachusetts Medical School,","University of Illinois Urbana-Champaign, Urbana, United States"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Medicine, University of Massachusetts Medical School, Worcester, MA,","institution_ids":["https://openalex.org/I166722992"]},{"raw_affiliation_string":"Program in Gene Function and Expression, University of Massachusetts Medical School,","institution_ids":["https://openalex.org/I4210099679","https://openalex.org/I166722992"]},{"raw_affiliation_string":"University of Illinois Urbana-Champaign, Urbana, United States","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5070760688"],"corresponding_institution_ids":["https://openalex.org/I166722992"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.3373,"has_fulltext":true,"cited_by_count":238,"citation_normalized_percentile":{"value":0.94949131,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"39","issue":"suppl_1","first_page":"D111","last_page":"D117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8074058294296265},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5715627670288086},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5464211702346802},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.521686315536499},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5145049095153809},{"id":"https://openalex.org/keywords/drosophila","display_name":"Drosophila (subgenus)","score":0.5060486197471619},{"id":"https://openalex.org/keywords/flat-file-database","display_name":"Flat file database","score":0.4940686523914337},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4531840980052948},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.43481045961380005},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.4119150638580322},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.40335455536842346},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.28517478704452515},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25111323595046997},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.24599486589431763},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1399390995502472}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8074058294296265},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5715627670288086},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5464211702346802},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.521686315536499},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5145049095153809},{"id":"https://openalex.org/C2776041557","wikidata":"https://www.wikidata.org/wiki/Q3715451","display_name":"Drosophila (subgenus)","level":3,"score":0.5060486197471619},{"id":"https://openalex.org/C201743585","wikidata":"https://www.wikidata.org/wiki/Q1373925","display_name":"Flat file database","level":5,"score":0.4940686523914337},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4531840980052948},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.43481045961380005},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.4119150638580322},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.40335455536842346},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.28517478704452515},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25111323595046997},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.24599486589431763},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1399390995502472},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C95637964","wikidata":"https://www.wikidata.org/wiki/Q82753","display_name":"Computer file","level":2,"score":0.0},{"id":"https://openalex.org/C13674803","wikidata":"https://www.wikidata.org/wiki/Q7627301","display_name":"Stub file","level":3,"score":0.0},{"id":"https://openalex.org/C21729314","wikidata":"https://www.wikidata.org/wiki/Q7896858","display_name":"Unix file types","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020798","descriptor_name":"Two-Hybrid System Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020798","descriptor_name":"Two-Hybrid System Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020798","descriptor_name":"Two-Hybrid System Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029721","descriptor_name":"Drosophila Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkq858","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq858","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D111/18787760/gkq858.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:21097781","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21097781","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digitalcommons.wustl.edu:open_access_pubs-1069","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/open_access_pubs/70","pdf_url":"https://digitalcommons.wustl.edu/cgi/viewcontent.cgi?article=1069&context=open_access_pubs","source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Open Access Publications","raw_type":"text"},{"id":"pmh:oai:escholarship.umassmed.edu:pgfe_pp-1037","is_oa":false,"landing_page_url":"https://escholarship.umassmed.edu/pgfe_pp/37","pdf_url":null,"source":{"id":"https://openalex.org/S4306400883","display_name":"The Journal of the American Medical Association (JAMA) Network (American Medical Association)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173654999","host_organization_name":"American Medical Association","host_organization_lineage":["https://openalex.org/I173654999"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Program in Gene Function and Expression Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3013762","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013762","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq858","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq858","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D111/18787760/gkq858.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1975992663.pdf","grobid_xml":"https://content.openalex.org/works/W1975992663.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1490553060","https://openalex.org/W1592870802","https://openalex.org/W1595688369","https://openalex.org/W1785629757","https://openalex.org/W1980253661","https://openalex.org/W1984003821","https://openalex.org/W1986920519","https://openalex.org/W1991770658","https://openalex.org/W2013414181","https://openalex.org/W2019136439","https://openalex.org/W2041877620","https://openalex.org/W2041966847","https://openalex.org/W2058552632","https://openalex.org/W2061674320","https://openalex.org/W2061834804","https://openalex.org/W2073761355","https://openalex.org/W2079321730","https://openalex.org/W2079450159","https://openalex.org/W2085152917","https://openalex.org/W2100261113","https://openalex.org/W2103777723","https://openalex.org/W2118628540","https://openalex.org/W2122535550","https://openalex.org/W2129795133","https://openalex.org/W2135030836","https://openalex.org/W2141354959","https://openalex.org/W2142570576","https://openalex.org/W2142890842","https://openalex.org/W2142946358","https://openalex.org/W2145091349","https://openalex.org/W2149769193","https://openalex.org/W2152121035","https://openalex.org/W2157009395","https://openalex.org/W2158266834","https://openalex.org/W2158531097","https://openalex.org/W2161849959","https://openalex.org/W2163965551","https://openalex.org/W2166894044","https://openalex.org/W2170628952","https://openalex.org/W2171018484","https://openalex.org/W2402793346","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4248318091","https://openalex.org/W6635200387"],"related_works":["https://openalex.org/W2162836426","https://openalex.org/W2734802753","https://openalex.org/W2149312834","https://openalex.org/W3089376739","https://openalex.org/W2156159819","https://openalex.org/W2000233467","https://openalex.org/W2143172590","https://openalex.org/W4200283209","https://openalex.org/W2294175390","https://openalex.org/W311334411"],"abstract_inverted_index":{"FlyFactorSurvey":[0],"(http://pgfe.umassmed.edu/TFDBS/)":[1],"is":[2],"a":[3,91],"database":[4,22,86,111],"of":[5,66,99,101],"DNA":[6],"binding":[7,53,74],"specificities":[8],"for":[9,35,62,69],"Drosophila":[10,107,127],"transcription":[11],"factors":[12],"(TFs)":[13],"primarily":[14],"determined":[15],"using":[16],"the":[17,97,106],"bacterial":[18],"one-hybrid":[19],"system.":[20],"The":[21],"provides":[23],"community":[24],"access":[25],"to":[26,51,81,90,95,123],"over":[27,36],"400":[28],"recognition":[29],"motifs":[30,83],"and":[31,45,59,112,118,129],"position":[32],"weight":[33],"matrices":[34,58],"200":[37],"TFs,":[38,64],"including":[39],"many":[40],"unpublished":[41],"motifs.":[42],"Search":[43],"tools":[44,78,115],"flat":[46],"file":[47],"downloads":[48],"are":[49],"provided":[50],"retrieve":[52],"site":[54],"information":[55],"(as":[56],"sequences,":[57],"sequence":[60],"logos)":[61],"individual":[63,103],"groups":[65],"TFs":[67,71,128],"or":[68,94],"all":[70],"with":[72,121],"characterized":[73],"specificities.":[75],"Linked":[76],"analysis":[77],"allow":[79],"users":[80],"identify":[82],"within":[84],"our":[85],"that":[87],"share":[88],"similarity":[89],"query":[92],"matrix":[93],"view":[96],"distribution":[98],"occurrences":[100],"an":[102],"motif":[104],"throughout":[105],"genome.":[108],"Together,":[109],"this":[110],"its":[113],"associated":[114],"provide":[116],"computational":[117],"experimental":[119],"biologists":[120],"resources":[122],"predict":[124],"interactions":[125],"between":[126],"target":[130],"cis-regulatory":[131],"sequences.":[132]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":26},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":28},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":13}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}