{"id":"https://openalex.org/W2047729281","doi":"https://doi.org/10.1093/nar/gkq811","title":"GreenPhylDB v2.0: comparative and functional genomics in plants","display_name":"GreenPhylDB v2.0: comparative and functional genomics in plants","publication_year":2010,"publication_date":"2010-09-22","ids":{"openalex":"https://openalex.org/W2047729281","doi":"https://doi.org/10.1093/nar/gkq811","mag":"2047729281","pmid":"https://pubmed.ncbi.nlm.nih.gov/20864446"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq811","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq811","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1095/18787629/gkq811.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1095/18787629/gkq811.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037037301","display_name":"Mathieu Rouard","orcid":"https://orcid.org/0000-0003-0284-1885"},"institutions":[{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Mathieu Rouard","raw_affiliation_strings":["Bioversity International - CfL programme Parc Scientifique Agropolis II, 34397 Montpellier, France. m.rouard@cgiar.org","Bioversity International, CfL programme Parc Scientifique Agropolis II, 34397 Montpellier, France"],"affiliations":[{"raw_affiliation_string":"Bioversity International - CfL programme Parc Scientifique Agropolis II, 34397 Montpellier, France. m.rouard@cgiar.org","institution_ids":["https://openalex.org/I251321805"]},{"raw_affiliation_string":"Bioversity International, CfL programme Parc Scientifique Agropolis II, 34397 Montpellier, France","institution_ids":["https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045221753","display_name":"Valentin Guignon","orcid":"https://orcid.org/0000-0003-0903-6811"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Valentin Guignon","raw_affiliation_strings":["Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,","CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and"],"affiliations":[{"raw_affiliation_string":"Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,","institution_ids":["https://openalex.org/I251321805"]},{"raw_affiliation_string":"CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112900108","display_name":"Christelle Aluome","orcid":null},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christelle Aluome","raw_affiliation_strings":["Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,","CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and"],"affiliations":[{"raw_affiliation_string":"Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,","institution_ids":["https://openalex.org/I251321805"]},{"raw_affiliation_string":"CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051211037","display_name":"Marie\u2010Ang\u00e9lique Laporte","orcid":"https://orcid.org/0000-0002-8461-9745"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-Ang\u00e9lique Laporte","raw_affiliation_strings":["CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and"],"affiliations":[{"raw_affiliation_string":"CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018267453","display_name":"Ga\u00ebtan Droc","orcid":"https://orcid.org/0000-0003-1849-1269"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ga\u00ebtan Droc","raw_affiliation_strings":["CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and"],"affiliations":[{"raw_affiliation_string":"CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039842209","display_name":"Christian Walde","orcid":null},"institutions":[{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christian Walde","raw_affiliation_strings":["Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,"],"affiliations":[{"raw_affiliation_string":"Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,","institution_ids":["https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079950186","display_name":"Christian M. Zmasek","orcid":"https://orcid.org/0000-0002-7933-2424"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian M. Zmasek","raw_affiliation_strings":["Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027913002","display_name":"Christophe P\u00e9rin","orcid":"https://orcid.org/0000-0002-2469-310X"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe P\u00e9rin","raw_affiliation_strings":["CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and"],"affiliations":[{"raw_affiliation_string":"CIRAD, Department BIOS, UMR DAP -TA40/03, 34398 Montpellier, France and","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050224337","display_name":"Matthieu Conte","orcid":null},"institutions":[{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Matthieu G. Conte","raw_affiliation_strings":["Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,"],"affiliations":[{"raw_affiliation_string":"Bioversity International -CfL programme Parc Scientifique Agropolis II, 34397 Montpellier,","institution_ids":["https://openalex.org/I251321805"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5037037301"],"corresponding_institution_ids":["https://openalex.org/I251321805"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.4729,"has_fulltext":true,"cited_by_count":105,"citation_normalized_percentile":{"value":0.95265242,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"39","issue":"suppl_1","first_page":"D1095","last_page":"D1102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8615940809249878},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.7245033979415894},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6633287072181702},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6497414112091064},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.6372027397155762},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.626814603805542},{"id":"https://openalex.org/keywords/gene-cluster","display_name":"Gene cluster","score":0.597140908241272},{"id":"https://openalex.org/keywords/orthologous-gene","display_name":"Orthologous Gene","score":0.5869948267936707},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5745686888694763},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5391144752502441},{"id":"https://openalex.org/keywords/phylum","display_name":"Phylum","score":0.5374762415885925},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48493126034736633},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.4427310824394226},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4250493049621582},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.4213332533836365},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.41067713499069214},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.24505239725112915},{"id":"https://openalex.org/keywords/nomenclature","display_name":"Nomenclature","score":0.12644433975219727},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07039198279380798}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8615940809249878},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.7245033979415894},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6633287072181702},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6497414112091064},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.6372027397155762},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.626814603805542},{"id":"https://openalex.org/C36857842","wikidata":"https://www.wikidata.org/wiki/Q1501261","display_name":"Gene cluster","level":3,"score":0.597140908241272},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.5869948267936707},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5745686888694763},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5391144752502441},{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.5374762415885925},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48493126034736633},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.4427310824394226},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4250493049621582},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.4213332533836365},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.41067713499069214},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.24505239725112915},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.12644433975219727},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07039198279380798},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq811","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq811","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1095/18787629/gkq811.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20864446","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20864446","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3013755","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3013755","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:agritrop.cirad.fr:558075","is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/558075/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq811","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq811","pdf_url":"https://academic.oup.com/nar/article-pdf/39/suppl_1/D1095/18787629/gkq811.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3468950077","display_name":null,"funder_award_id":"Health","funder_id":"https://openalex.org/F4320329182","funder_display_name":"Consortium of International Agricultural Research Centers"}],"funders":[{"id":"https://openalex.org/F4320329182","display_name":"Consortium of International Agricultural Research Centers","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2047729281.pdf","grobid_xml":"https://content.openalex.org/works/W2047729281.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1490137556","https://openalex.org/W1494075612","https://openalex.org/W1958476169","https://openalex.org/W1963524921","https://openalex.org/W1972171731","https://openalex.org/W1993025082","https://openalex.org/W1994145712","https://openalex.org/W2011729692","https://openalex.org/W2012986985","https://openalex.org/W2014704298","https://openalex.org/W2021795499","https://openalex.org/W2022366078","https://openalex.org/W2022685385","https://openalex.org/W2055043387","https://openalex.org/W2057543502","https://openalex.org/W2058815899","https://openalex.org/W2060791849","https://openalex.org/W2065458292","https://openalex.org/W2096306047","https://openalex.org/W2098115340","https://openalex.org/W2099182237","https://openalex.org/W2100278941","https://openalex.org/W2101021876","https://openalex.org/W2102502076","https://openalex.org/W2103017472","https://openalex.org/W2103546861","https://openalex.org/W2106596862","https://openalex.org/W2116423958","https://openalex.org/W2120772351","https://openalex.org/W2123060905","https://openalex.org/W2123550792","https://openalex.org/W2124166542","https://openalex.org/W2125346198","https://openalex.org/W2126260099","https://openalex.org/W2128667600","https://openalex.org/W2130956021","https://openalex.org/W2132247062","https://openalex.org/W2141545183","https://openalex.org/W2142543069","https://openalex.org/W2143592941","https://openalex.org/W2146709375","https://openalex.org/W2149057166","https://openalex.org/W2150447055","https://openalex.org/W2152466204","https://openalex.org/W2153488363","https://openalex.org/W2157009395","https://openalex.org/W2159266221","https://openalex.org/W2159770366","https://openalex.org/W2165990439","https://openalex.org/W2167865654","https://openalex.org/W2170381940","https://openalex.org/W2175948239","https://openalex.org/W6648193069"],"related_works":["https://openalex.org/W1977739016","https://openalex.org/W2952377671","https://openalex.org/W2123026189","https://openalex.org/W2965072475","https://openalex.org/W3011496678","https://openalex.org/W4242415927","https://openalex.org/W3014906505","https://openalex.org/W4244562210","https://openalex.org/W4250942661","https://openalex.org/W2154685483"],"abstract_inverted_index":{"GreenPhylDB":[0,125],"is":[1,91,126,137],"a":[2,117,127,146],"database":[3,55],"designed":[4],"for":[5],"comparative":[6,143],"and":[7,42,51,65,87,136,157],"functional":[8],"genomics":[9,144],"based":[10],"on":[11],"complete":[12],"genomes.":[13],"Version":[14],"2":[15],"now":[16],"contains":[17],"sixteen":[18],"full":[19],"genomes":[20],"of":[21,23,59,129,154],"members":[22],"the":[24,101,130,152],"plantae":[25],"kingdom,":[26],"ranging":[27],"from":[28],"algae":[29],"to":[30,48,79,99,106,150,160],"angiosperms,":[31],"automatically":[32],"clustered":[33],"into":[34],"gene":[35,60,68,72,75,80,89,107,118,163],"families.":[36,69,108],"Gene":[37],"families":[38,61],"are":[39,112],"manually":[40],"annotated":[41],"then":[43],"analyzed":[44],"phylogenetically":[45],"in":[46,145],"order":[47],"elucidate":[49],"orthologous":[50,88],"paralogous":[52],"relationships.":[53],"The":[54],"offers":[56],"various":[57],"lists":[58],"including":[62],"plant,":[63],"phylum":[64],"species":[66],"specific":[67],"For":[70],"each":[71],"cluster":[73],"or":[74],"family,":[76],"easy":[77],"access":[78],"composition,":[81],"protein":[82],"domains,":[83],"publications,":[84],"external":[85],"links":[86],"predictions":[90],"provided.":[92],"Web":[93],"interfaces":[94],"have":[95],"been":[96],"further":[97],"developed":[98],"improve":[100],"navigation":[102],"through":[103],"information":[104],"related":[105],"New":[109],"analysis":[110],"tools":[111],"also":[113],"available,":[114],"such":[115],"as":[116],"family":[119],"ontology":[120],"browser":[121],"that":[122],"facilitates":[123],"exploration.":[124],"component":[128],"South":[131],"Green":[132],"Bioinformatics":[133],"Platform":[134],"(http://southgreen.cirad.fr/)":[135],"accessible":[138],"at":[139],"http://greenphyl.cirad.fr.":[140],"It":[141],"enables":[142],"broad":[147],"taxonomy":[148],"context":[149],"enhance":[151],"understanding":[153],"evolutionary":[155],"processes":[156],"thus":[158],"tends":[159],"speed":[161],"up":[162],"discovery.":[164]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":11}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
