{"id":"https://openalex.org/W2102502325","doi":"https://doi.org/10.1093/nar/gkq538","title":"ZOOM Lite: next-generation sequencing data mapping and visualization software","display_name":"ZOOM Lite: next-generation sequencing data mapping and visualization software","publication_year":2010,"publication_date":"2010-06-08","ids":{"openalex":"https://openalex.org/W2102502325","doi":"https://doi.org/10.1093/nar/gkq538","mag":"2102502325","pmid":"https://pubmed.ncbi.nlm.nih.gov/20530531"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq538","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq538","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W743/3912589/gkq538.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W743/3912589/gkq538.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065237213","display_name":"Zhiwu Zhang","orcid":"https://orcid.org/0000-0002-5784-9684"},"institutions":[{"id":"https://openalex.org/I4210109217","display_name":"Bioinformatics Solutions (Canada)","ror":"https://ror.org/01jzb6k09","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210109217"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Z. Zhang","raw_affiliation_strings":["Bioinformatics Solutions Inc., Waterloo, ON N2L 6J2, Canada"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Solutions Inc., Waterloo, ON N2L 6J2, Canada","institution_ids":["https://openalex.org/I4210109217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101990185","display_name":"He Lin","orcid":"https://orcid.org/0000-0003-3599-4837"},"institutions":[{"id":"https://openalex.org/I4210109217","display_name":"Bioinformatics Solutions (Canada)","ror":"https://ror.org/01jzb6k09","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210109217"]},{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"H. Lin","raw_affiliation_strings":["Bioinformatics Solutions Inc., Waterloo, ON N2L 6J2 and 2David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, ON N2L 3G1, Canada"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Solutions Inc., Waterloo, ON N2L 6J2 and 2David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, ON N2L 3G1, Canada","institution_ids":["https://openalex.org/I4210109217","https://openalex.org/I151746483"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100749727","display_name":"Bin Ma","orcid":"https://orcid.org/0000-0001-6254-4087"},"institutions":[{"id":"https://openalex.org/I4210109217","display_name":"Bioinformatics Solutions (Canada)","ror":"https://ror.org/01jzb6k09","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210109217"]},{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"B. Ma","raw_affiliation_strings":["Bioinformatics Solutions Inc., Waterloo, ON N2L 6J2 and 2David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, ON N2L 3G1, Canada"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Solutions Inc., Waterloo, ON N2L 6J2 and 2David R. Cheriton School of Computer Science, University of Waterloo, Waterloo, ON N2L 3G1, Canada","institution_ids":["https://openalex.org/I4210109217","https://openalex.org/I151746483"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065237213"],"corresponding_institution_ids":["https://openalex.org/I4210109217"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.4066,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.63566926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"Web Server","first_page":"W743","last_page":"W748"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.8276403546333313},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.738819420337677},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7100129127502441},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6620216369628906},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.617434024810791},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5638934969902039},{"id":"https://openalex.org/keywords/software-visualization","display_name":"Software visualization","score":0.5234636664390564},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.5096182823181152},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3331954777240753},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3274269700050354},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25489747524261475},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.24630507826805115},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22632643580436707},{"id":"https://openalex.org/keywords/software-construction","display_name":"Software construction","score":0.223384827375412},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20359787344932556}],"concepts":[{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.8276403546333313},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.738819420337677},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7100129127502441},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6620216369628906},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.617434024810791},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5638934969902039},{"id":"https://openalex.org/C4379982","wikidata":"https://www.wikidata.org/wiki/Q1273511","display_name":"Software visualization","level":5,"score":0.5234636664390564},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.5096182823181152},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3331954777240753},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3274269700050354},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25489747524261475},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.24630507826805115},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22632643580436707},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.223384827375412},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20359787344932556},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkq538","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq538","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W743/3912589/gkq538.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20530531","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20530531","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.868.2352","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.868.2352","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/06/08/nar.gkq538.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.870.1491","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.870.1491","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/06/08/nar.gkq538.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W743","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W743","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896157","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq538","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq538","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq538","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W743/3912589/gkq538.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102502325.pdf","grobid_xml":"https://content.openalex.org/works/W2102502325.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1981509058","https://openalex.org/W1993549062","https://openalex.org/W2015416439","https://openalex.org/W2063985242","https://openalex.org/W2064557873","https://openalex.org/W2072193858","https://openalex.org/W2103441770","https://openalex.org/W2107208788","https://openalex.org/W2107233609","https://openalex.org/W2112113834","https://openalex.org/W2115936826","https://openalex.org/W2122270655","https://openalex.org/W2124985265","https://openalex.org/W2127226151","https://openalex.org/W2139760555","https://openalex.org/W2143124024","https://openalex.org/W2143325524","https://openalex.org/W2153527981","https://openalex.org/W2161645441","https://openalex.org/W2171111703"],"related_works":["https://openalex.org/W2357185242","https://openalex.org/W2265972683","https://openalex.org/W2386674074","https://openalex.org/W3212808753","https://openalex.org/W3039881005","https://openalex.org/W2348550427","https://openalex.org/W2956101281","https://openalex.org/W2103285227","https://openalex.org/W4200328636","https://openalex.org/W2102502325"],"abstract_inverted_index":{"High-throughput":[0],"next-generation":[1],"sequencing":[2,47],"technologies":[3],"pose":[4],"increasing":[5],"demands":[6],"on":[7,72],"the":[8,87,92,101],"efficiency,":[9],"accuracy":[10],"and":[11,30,50,52,63,80,83,110],"usability":[12],"of":[13,37,40,42,106],"data":[14],"analysis":[15],"software.":[16],"In":[17],"this":[18],"article,":[19],"we":[20],"present":[21],"ZOOM":[22,58],"Lite,":[23],"a":[24,34,67,104],"software":[25,76,102,119],"for":[26,97],"efficient":[27],"reads":[28,48,61],"mapping":[29,38,62,89,95],"result":[31,64,90,116],"visualization.":[32],"With":[33],"kernel":[35],"capable":[36],"tens":[39],"millions":[41],"Illumina":[43],"or":[44,91],"AB":[45],"SOLiD":[46],"efficiently":[49],"accurately,":[51],"an":[53],"intuitive":[54],"graphical":[55],"user":[56],"interface,":[57],"Lite":[59],"integrates":[60],"visualization":[65],"into":[66],"easy":[68],"to":[69,112],"use":[70],"pipeline":[71],"desktop":[73],"PC.":[74],"The":[75,118],"handles":[77],"both":[78,86],"single-end":[79],"paired-end":[81],"reads,":[82],"can":[84],"output":[85],"unique":[88],"top":[93],"N":[94],"results":[96],"each":[98],"read.":[99],"Additionally,":[100],"takes":[103],"variety":[105],"input":[107],"file":[108],"formats":[109],"outputs":[111],"several":[113],"commonly":[114],"used":[115],"formats.":[117],"is":[120],"freely":[121],"available":[122],"at":[123],"http://bioinfor.com/zoom/lite/.":[124]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
