{"id":"https://openalex.org/W2080575228","doi":"https://doi.org/10.1093/nar/gkq522","title":"ProteinDBS v2.0: a web server for global and local protein structure search","display_name":"ProteinDBS v2.0: a web server for global and local protein structure search","publication_year":2010,"publication_date":"2010-06-10","ids":{"openalex":"https://openalex.org/W2080575228","doi":"https://doi.org/10.1093/nar/gkq522","mag":"2080575228","pmid":"https://pubmed.ncbi.nlm.nih.gov/20538653"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq522","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq522","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W53/3909149/gkq522.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W53/3909149/gkq522.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013031415","display_name":"Chi\u2010Ren Shyu","orcid":"https://orcid.org/0000-0001-9197-9522"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C.-R. Shyu","raw_affiliation_strings":["Informatics Institute, University of Missouri, Columbia, MO 65211, USA. shyuc@missouri.edu","Informatics Institute, University of Missouri, Columbia, MO 65211, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute, University of Missouri, Columbia, MO 65211, USA. shyuc@missouri.edu","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Informatics Institute, University of Missouri, Columbia, MO 65211, USA#TAB#","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101969689","display_name":"Bin Pang","orcid":"https://orcid.org/0000-0003-0298-2047"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Pang","raw_affiliation_strings":["Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057508937","display_name":"Pin-Hao Chi","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P.-H. Chi","raw_affiliation_strings":["Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028509888","display_name":"Nan Zhao","orcid":"https://orcid.org/0000-0002-7897-2374"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Zhao","raw_affiliation_strings":["Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022192689","display_name":"Dmitry Korkin","orcid":"https://orcid.org/0000-0002-3875-9085"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Korkin","raw_affiliation_strings":["Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Xu","raw_affiliation_strings":["Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute and 2 Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Informatics Institute and 2Department of Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5013031415"],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.0,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.10790969,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"38","issue":"Web Server","first_page":"W53","last_page":"W58"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7385597229003906},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6597316861152649},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6584563255310059},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.634626030921936},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6209747195243835},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6033264398574829},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.57625812292099},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.553374707698822},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5162689685821533},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47655847668647766},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4489436149597168},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.43244442343711853},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4253332018852234},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40219008922576904},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38636860251426697},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.21261832118034363},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.12675020098686218},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12364992499351501},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09525159001350403}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7385597229003906},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6597316861152649},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6584563255310059},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.634626030921936},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6209747195243835},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6033264398574829},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.57625812292099},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.553374707698822},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5162689685821533},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47655847668647766},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4489436149597168},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.43244442343711853},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4253332018852234},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40219008922576904},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38636860251426697},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.21261832118034363},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.12675020098686218},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12364992499351501},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09525159001350403},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq522","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq522","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W53/3909149/gkq522.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20538653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20538653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W53","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W53","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896110","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq522","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq522","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq522","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W53/3909149/gkq522.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309568","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2080575228.pdf","grobid_xml":"https://content.openalex.org/works/W2080575228.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W782600061","https://openalex.org/W1991698196","https://openalex.org/W2013404472","https://openalex.org/W2022058405","https://openalex.org/W2027337253","https://openalex.org/W2045490695","https://openalex.org/W2049540991","https://openalex.org/W2062318714","https://openalex.org/W2073193878","https://openalex.org/W2085277871","https://openalex.org/W2096540816","https://openalex.org/W2097564976","https://openalex.org/W2101756156","https://openalex.org/W2113563422","https://openalex.org/W2115451817","https://openalex.org/W2126016150","https://openalex.org/W2144998676","https://openalex.org/W2152326664","https://openalex.org/W2157092487","https://openalex.org/W2163016858","https://openalex.org/W4210536425","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W4388749535","https://openalex.org/W1979707045","https://openalex.org/W4285340733","https://openalex.org/W2419335570","https://openalex.org/W2121688928","https://openalex.org/W1973462822","https://openalex.org/W2013211627","https://openalex.org/W4375844720","https://openalex.org/W2044716310","https://openalex.org/W1897312405"],"abstract_inverted_index":{"ProteinDBS":[0,39,115,147],"v2.0":[1,40,116,148],"is":[2,70,134,149,193],"a":[3,19,52,81,104,150],"web":[4],"server":[5],"designed":[6],"for":[7],"efficient":[8],"and":[9,12,28,46,92,123,144],"accurate":[10,112],"comparisons":[11,77,102],"searches":[13,33],"of":[14,34,60,75,88,107],"structurally":[15],"similar":[16],"proteins":[17,109],"from":[18,80,103,185],"large-scale":[20],"database.":[21],"It":[22],"provides":[23],"two":[24],"comparison":[25,113,168],"methods,":[26],"global-to-global":[27],"local-to-local,":[29],"to":[30,50,72,99,153,173],"facilitate":[31],"the":[32,135,162,175,186],"protein":[35,90,121,188],"structures":[36,126],"or":[37,156,183],"substructures.":[38],"applies":[41],"advanced":[42],"feature":[43],"extraction":[44],"algorithms":[45],"scalable":[47],"indexing":[48],"techniques":[49],"achieve":[51],"high-running":[53],"speed":[54],"while":[55],"preserving":[56],"reasonably":[57],"high":[58],"precision":[59],"structural":[61],"comparison.":[62],"The":[63,191],"experimental":[64],"results":[65,74],"show":[66],"that":[67,93,139],"our":[68,131],"system":[69,192],"able":[71],"return":[73],"global":[76,143],"in":[78,179],"seconds":[79],"complete":[82,100],"Protein":[83],"Data":[84],"Bank":[85],"(PDB)":[86],"database":[87,106],"152,959":[89],"chains":[91],"it":[94],"takes":[95],"much":[96],"less":[97],"time":[98],"local":[101,145,167],"non-redundant":[105],"3276":[108],"than":[110],"other":[111],"methods.":[114],"supports":[117],"query":[118],"by":[119,124,128,166],"PDB":[120],"ID":[122],"new":[125,181],"uploaded":[127],"users.":[129],"To":[130],"knowledge,":[132],"this":[133],"only":[136],"search":[137],"engine":[138],"can":[140,169],"simultaneously":[141],"support":[142],"comparisons.":[146],"useful":[151],"tool":[152],"investigate":[154],"functional":[155],"evolutional":[157],"relationships":[158],"among":[159],"proteins.":[160],"Moreover,":[161],"common":[163],"substructures":[164],"identified":[165],"be":[170],"potentially":[171],"used":[172],"assist":[174],"human":[176],"curation":[177],"process":[178],"discovering":[180],"domains":[182],"folds":[184],"ever-growing":[187],"structure":[189],"databases.":[190],"hosted":[194],"at":[195],"http://ProteinDBS.rnet.missouri.edu.":[196]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-09T07:27:16.801131","created_date":"2025-10-10T00:00:00"}
