{"id":"https://openalex.org/W2172135976","doi":"https://doi.org/10.1093/nar/gkq513","title":"SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study","display_name":"SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study","publication_year":2010,"publication_date":"2010-06-06","ids":{"openalex":"https://openalex.org/W2172135976","doi":"https://doi.org/10.1093/nar/gkq513","mag":"2172135976","pmid":"https://pubmed.ncbi.nlm.nih.gov/20529875"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq513","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W201/3903389/gkq513.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W201/3903389/gkq513.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075069666","display_name":"Scott F. Saccone","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. F. Saccone","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, USA. ssaccone@wustl.edu","Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, USA. ssaccone@wustl.edu","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038471503","display_name":"Rapha\u00ebl Bolze","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Bolze","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016853551","display_name":"Paul D. Thomas","orcid":"https://orcid.org/0000-0002-9074-3507"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Thomas","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104686004","display_name":"Jianping Quan","orcid":"https://orcid.org/0000-0002-7064-080X"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Quan","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034246908","display_name":"Gaurang Mehta","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Mehta","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031941569","display_name":"Ewa Deelman","orcid":"https://orcid.org/0000-0001-5106-503X"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Deelman","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022746664","display_name":"Jay A. Tischfield","orcid":"https://orcid.org/0000-0003-3217-8287"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. A. Tischfield","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056948570","display_name":"John P. Rice","orcid":"https://orcid.org/0000-0002-2765-3824"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. P. Rice","raw_affiliation_strings":["Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, Washington University, St Louis, MO, 2Information Sciences Institute, University of Southern California, CA and 3Department of Genetics, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I1174212","https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5075069666"],"corresponding_institution_ids":["https://openalex.org/I102322142","https://openalex.org/I1174212","https://openalex.org/I204465549"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.1425,"has_fulltext":false,"cited_by_count":69,"citation_normalized_percentile":{"value":0.95953237,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"Web Server","first_page":"W201","last_page":"W209"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.7126877903938293},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6500916481018066},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5608761310577393},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5390893816947937},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47800078988075256},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.46574413776397705},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38019225001335144},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3722248375415802},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.34393131732940674},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33007505536079407},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3270668685436249},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.221760094165802},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.22070243954658508}],"concepts":[{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.7126877903938293},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6500916481018066},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5608761310577393},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5390893816947937},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47800078988075256},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.46574413776397705},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38019225001335144},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3722248375415802},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.34393131732940674},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33007505536079407},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3270668685436249},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.221760094165802},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.22070243954658508}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkq513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq513","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W201/3903389/gkq513.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20529875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20529875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digitalcommons.wustl.edu:open_access_pubs-9350","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/open_access_pubs/8344","pdf_url":"https://digitalcommons.wustl.edu/open_access_pubs/8344","source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Open Access Publications","raw_type":"text"},{"id":"pmh:oai:europepmc.org:1955850","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2896195","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W201","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W201","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq513","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq513","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W201/3903389/gkq513.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[],"funders":[{"id":"https://openalex.org/F4320333121","display_name":"University of Texas at El Paso","ror":"https://ror.org/04d5vba33"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337380","display_name":"Division of Mathematical Sciences","ror":"https://ror.org/051fftw81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":67,"referenced_works":["https://openalex.org/W215810951","https://openalex.org/W1511621596","https://openalex.org/W1518767273","https://openalex.org/W1540749342","https://openalex.org/W1970629860","https://openalex.org/W1976042209","https://openalex.org/W1980740976","https://openalex.org/W1980991473","https://openalex.org/W1983540007","https://openalex.org/W1987493079","https://openalex.org/W1998641738","https://openalex.org/W2006720016","https://openalex.org/W2011197968","https://openalex.org/W2013235753","https://openalex.org/W2015265405","https://openalex.org/W2019983262","https://openalex.org/W2023648355","https://openalex.org/W2025471227","https://openalex.org/W2030157411","https://openalex.org/W2036210716","https://openalex.org/W2038921819","https://openalex.org/W2039608769","https://openalex.org/W2051616601","https://openalex.org/W2059145105","https://openalex.org/W2059867286","https://openalex.org/W2063218366","https://openalex.org/W2083291438","https://openalex.org/W2096525273","https://openalex.org/W2098212444","https://openalex.org/W2102945991","https://openalex.org/W2103465143","https://openalex.org/W2108366237","https://openalex.org/W2109372707","https://openalex.org/W2110846909","https://openalex.org/W2111854851","https://openalex.org/W2112271873","https://openalex.org/W2112874424","https://openalex.org/W2114858580","https://openalex.org/W2116910732","https://openalex.org/W2117446594","https://openalex.org/W2118320202","https://openalex.org/W2119279196","https://openalex.org/W2120240963","https://openalex.org/W2122791877","https://openalex.org/W2123340910","https://openalex.org/W2124163128","https://openalex.org/W2127640118","https://openalex.org/W2128476271","https://openalex.org/W2129682060","https://openalex.org/W2130277691","https://openalex.org/W2131533686","https://openalex.org/W2134072500","https://openalex.org/W2138020005","https://openalex.org/W2148998706","https://openalex.org/W2149385661","https://openalex.org/W2151578735","https://openalex.org/W2158356009","https://openalex.org/W2162530578","https://openalex.org/W2169823080","https://openalex.org/W2170187925","https://openalex.org/W2465791529","https://openalex.org/W2772934464","https://openalex.org/W2918025614","https://openalex.org/W4210430020","https://openalex.org/W4210774750","https://openalex.org/W4211208250","https://openalex.org/W4231041617"],"related_works":["https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2070581548","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W3016573916","https://openalex.org/W3157359833","https://openalex.org/W3024317680","https://openalex.org/W1511048503"],"abstract_inverted_index":{"SPOT":[0,106,185],"(http://spot.cgsmd.isi.edu),":[1],"the":[2,16,33,42,70,92,128,152,159,168,184],"SNP":[3,181],"prioritization":[4,17],"online":[5],"tool,":[6],"is":[7,39,188],"a":[8,27,37,82,113,122,179],"web":[9,107,186],"site":[10,108],"for":[11,23,98],"integrating":[12],"biological":[13,56,176],"databases":[14,57,177],"into":[15,178],"of":[18,103,115,125,142,161,167],"single":[19],"nucleotide":[20],"polymorphisms":[21],"(SNPs)":[22],"further":[24],"study":[25,30],"after":[26,36],"genome-wide":[28],"association":[29],"(GWAS).":[31],"Typically,":[32],"next":[34],"step":[35],"GWAS":[38,118],"to":[40,69,111],"genotype":[41],"top":[43],"signals":[44],"in":[45,66,151,174],"an":[46,189],"independent":[47],"replication":[48],"sample.":[49],"Investigators":[50],"will":[51],"often":[52],"incorporate":[53],"information":[54,94],"from":[55],"so":[58],"that":[59],"biologically":[60],"relevant":[61],"SNPs,":[62],"such":[63,80],"as":[64,81],"those":[65],"genes":[67,135],"related":[68],"phenotype":[71],"or":[72,136,149],"with":[73,139],"potentially":[74],"non-neutral":[75],"effects":[76],"on":[77],"gene":[78],"expression":[79],"splice":[83],"sites,":[84],"are":[85],"given":[86],"higher":[87],"priority.":[88],"We":[89],"recently":[90],"introduced":[91],"genomic":[93,137],"network":[95],"(GIN)":[96],"method":[97],"systematically":[99],"implementing":[100],"this":[101],"kind":[102],"strategy.":[104],"The":[105,144],"allows":[109],"users":[110,155],"upload":[112],"list":[114,124],"SNPs":[116,126],"and":[117,120,192],"P-values":[119],"returns":[121],"prioritized":[123],"using":[127],"GIN":[129,169],"method.":[130,170],"Users":[131],"can":[132,146,156],"specify":[133],"candidate":[134],"regions":[138],"custom":[140],"levels":[141],"prioritization.":[143],"results":[145],"be":[147],"downloaded":[148],"viewed":[150],"browser":[153],"where":[154],"interactively":[157],"explore":[158],"details":[160],"each":[162],"SNP,":[163],"including":[164],"graphical":[165],"representations":[166],"For":[171],"investigators":[172],"interested":[173],"incorporating":[175],"post-GWAS":[180],"selection":[182],"strategy,":[183],"tool":[187],"easily":[190],"implemented":[191],"flexible":[193],"solution.":[194]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":7}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
