{"id":"https://openalex.org/W2167851075","doi":"https://doi.org/10.1093/nar/gkq481","title":"Struct2Net: a web service to predict protein-protein interactions using a structure-based approach","display_name":"Struct2Net: a web service to predict protein-protein interactions using a structure-based approach","publication_year":2010,"publication_date":"2010-05-31","ids":{"openalex":"https://openalex.org/W2167851075","doi":"https://doi.org/10.1093/nar/gkq481","mag":"2167851075","pmid":"https://pubmed.ncbi.nlm.nih.gov/20513650"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq481","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W508/3894651/gkq481.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W508/3894651/gkq481.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081688191","display_name":"Rohit Singh","orcid":"https://orcid.org/0000-0002-4084-7340"},"institutions":[{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Singh","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I160992636","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004967349","display_name":"Daeui Park","orcid":"https://orcid.org/0000-0002-9452-5849"},"institutions":[{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Park","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I160992636","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019398608","display_name":"Jinbo Xu","orcid":"https://orcid.org/0000-0001-7111-4839"},"institutions":[{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Xu","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I160992636","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055374689","display_name":"Ramakrishna V. Hosur","orcid":"https://orcid.org/0000-0002-9203-4552"},"institutions":[{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Hosur","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I160992636","https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044078921","display_name":"Bonnie Berger","orcid":"https://orcid.org/0000-0002-2724-7228"},"institutions":[{"id":"https://openalex.org/I160992636","display_name":"Toyota Technological Institute at Chicago","ror":"https://ror.org/02sn5gb64","country_code":"US","type":"education","lineage":["https://openalex.org/I160992636"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B. Berger","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3 Toyota Technological Institute at Chicago, Chicago, IL and 4 Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, 2Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA, 3Toyota Technological Institute at Chicago, Chicago, IL and 4Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA","institution_ids":["https://openalex.org/I160992636","https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044078921"],"corresponding_institution_ids":["https://openalex.org/I160992636","https://openalex.org/I63966007"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":2.3943,"has_fulltext":true,"cited_by_count":145,"citation_normalized_percentile":{"value":0.89019319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"38","issue":"Web Server","first_page":"W508","last_page":"W515"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.7697960734367371},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6982101202011108},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6339995265007019},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.611201822757721},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.573371171951294},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5160160064697266},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48931190371513367},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4323533773422241},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4160107672214508},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.41148242354393005},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3414663076400757},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3395501971244812},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2764119505882263},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22590139508247375},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21125468611717224}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.7697960734367371},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6982101202011108},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6339995265007019},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.611201822757721},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.573371171951294},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5160160064697266},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48931190371513367},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4323533773422241},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4160107672214508},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.41148242354393005},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3414663076400757},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3395501971244812},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2764119505882263},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22590139508247375},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21125468611717224},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkq481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq481","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W508/3894651/gkq481.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20513650","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20513650","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896152","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2896152","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:dspace.mit.edu:1721.1/70124","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/70124","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Oxford University Press","raw_type":"Article"},{"id":"pmh:oai:dspace.mit.edu:1721.1/70951","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/70951","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Oxford","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W508","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W508","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq481","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W508/3894651/gkq481.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1343851713","display_name":null,"funder_award_id":"1R01GM081871","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G325250174","display_name":"Structure based Prediction of the interactome","funder_award_id":"5r01gm081871-10","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G704483839","display_name":null,"funder_award_id":"R01 GM089753","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8220806211","display_name":null,"funder_award_id":"T32 GM087237","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167851075.pdf","grobid_xml":"https://content.openalex.org/works/W2167851075.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1879637501","https://openalex.org/W1964037779","https://openalex.org/W1974139890","https://openalex.org/W1984249061","https://openalex.org/W1988422871","https://openalex.org/W2007230416","https://openalex.org/W2009855757","https://openalex.org/W2037442572","https://openalex.org/W2043484763","https://openalex.org/W2056124433","https://openalex.org/W2067305633","https://openalex.org/W2071006937","https://openalex.org/W2079988374","https://openalex.org/W2083978969","https://openalex.org/W2085145974","https://openalex.org/W2093730890","https://openalex.org/W2097698606","https://openalex.org/W2098110345","https://openalex.org/W2100434392","https://openalex.org/W2100963023","https://openalex.org/W2101330776","https://openalex.org/W2101998831","https://openalex.org/W2103729016","https://openalex.org/W2113613985","https://openalex.org/W2114917397","https://openalex.org/W2118128448","https://openalex.org/W2128888818","https://openalex.org/W2130479394","https://openalex.org/W2130675570","https://openalex.org/W2131736388","https://openalex.org/W2133138357","https://openalex.org/W2135081201","https://openalex.org/W2135197754","https://openalex.org/W2140798893","https://openalex.org/W2141468602","https://openalex.org/W2142082723","https://openalex.org/W2155342128","https://openalex.org/W2158714788","https://openalex.org/W2160144441","https://openalex.org/W2164813401","https://openalex.org/W2917431650","https://openalex.org/W4231644740"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W2964314049","https://openalex.org/W2022326234","https://openalex.org/W4388694323","https://openalex.org/W3215098729","https://openalex.org/W1531941329","https://openalex.org/W4243081378","https://openalex.org/W2622356054","https://openalex.org/W2804670115","https://openalex.org/W1979330259"],"abstract_inverted_index":{"Struct2Net":[0,51],"is":[1,21,52,90,165],"a":[2,13,22,148,158],"web":[3,107,163],"server":[4],"for":[5,33,70],"predicting":[6,71],"interactions":[7,19],"between":[8],"arbitrary":[9],"protein":[10],"pairs":[11],"using":[12],"structure-based":[14,59,88],"approach.":[15],"Prediction":[16],"of":[17,25,42,92,101,146],"protein-protein":[18],"(PPIs)":[20],"central":[23],"area":[24],"interest":[26],"and":[27,35,95,125,131],"successful":[28],"prediction":[29],"would":[30],"provide":[31,58],"leads":[32],"experiments":[34],"drug":[36],"design;":[37],"however,":[38],"the":[39,43,53,98,102,118,144],"experimental":[40],"coverage":[41],"PPI":[44,60],"interactome":[45],"remains":[46],"inadequate.":[47],"We":[48],"believe":[49],"that":[50,62],"first":[54],"community-wide":[55],"resource":[56],"to":[57],"predictions":[61,127],"go":[63],"beyond":[64],"homology":[65],"modeling.":[66],"Also,":[67],"most":[68,119],"web-resources":[69],"PPIs":[72],"currently":[73],"rely":[74],"on":[75],"functional":[76],"genomic":[77],"data":[78],"(e.g.":[79],"GO":[80],"annotation,":[81],"gene":[82],"expression,":[83],"cellular":[84],"localization,":[85],"etc.).":[86],"Our":[87],"approach":[89],"independent":[91],"such":[93],"methods":[94],"only":[96],"requires":[97],"sequence":[99],"information":[100],"proteins":[103,138],"being":[104],"queried.":[105],"The":[106,162],"service":[108,164],"allows":[109],"multiple":[110],"querying":[111],"options,":[112],"aimed":[113],"at":[114,168],"maximizing":[115],"flexibility.":[116],"For":[117,137],"commonly":[120],"studied":[121],"organisms":[122],"(fly,":[123],"human":[124],"yeast),":[126],"have":[128,143],"been":[129],"pre-computed":[130,154],"can":[132],"be":[133],"retrieved":[134],"almost":[135],"instantaneously.":[136],"from":[139],"other":[140],"species,":[141],"users":[142],"option":[145],"getting":[147],"quick-but-approximate":[149],"result":[150],"(using":[151],"orthology":[152],"over":[153],"results)":[155],"or":[156],"having":[157],"full-blown":[159],"computation":[160],"performed.":[161],"freely":[166],"available":[167],"http://struct2net.csail.mit.edu.":[169]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":8}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
