{"id":"https://openalex.org/W2156620408","doi":"https://doi.org/10.1093/nar/gkq453","title":"WIWS: a protein structure bioinformatics Web service collection","display_name":"WIWS: a protein structure bioinformatics Web service collection","publication_year":2010,"publication_date":"2010-05-25","ids":{"openalex":"https://openalex.org/W2156620408","doi":"https://doi.org/10.1093/nar/gkq453","mag":"2156620408","pmid":"https://pubmed.ncbi.nlm.nih.gov/20501602"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq453","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W719/3887180/gkq453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W719/3887180/gkq453.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032383047","display_name":"Maarten L. Hekkelman","orcid":"https://orcid.org/0000-0002-9081-4707"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"M. L. Hekkelman","raw_affiliation_strings":["Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, 6525 GA 26 Nijmegen, The Netherlands","Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, 6525 GA 26 Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]},{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110225202","display_name":"Tim A. H. te Beek","orcid":null},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"T. A. H. te Beek","raw_affiliation_strings":["Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081272754","display_name":"Steve Pettifer","orcid":"https://orcid.org/0000-0002-1809-5621"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"S. R. Pettifer","raw_affiliation_strings":["Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112785083","display_name":"D. J. Thorne","orcid":"https://orcid.org/0009-0002-2402-3138"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"D. Thorne","raw_affiliation_strings":["Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016694329","display_name":"Teresa K. Attwood","orcid":"https://orcid.org/0000-0003-2409-4235"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["GB","NL"],"is_corresponding":false,"raw_author_name":"T. K. Attwood","raw_affiliation_strings":["Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075419050","display_name":"Gert Vriend","orcid":"https://orcid.org/0000-0002-1067-7053"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["GB","NL"],"is_corresponding":true,"raw_author_name":"G. Vriend","raw_affiliation_strings":["Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2 BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3 School of Computer Science and 4 Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Centre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences (NCMLS), Radboud University Nijmegen Medical centre, 6525 GA 26 Nijmegen, 2BioAssist, NBIC, 6525 GA 28 Nijmegen, The Netherlands, 3School of Computer Science and 4Faculty of Life Sciences, The University of Manchester, Manchester M13 9PL, UK","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5075419050"],"corresponding_institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I28407311","https://openalex.org/I4210109357"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.4219,"has_fulltext":true,"cited_by_count":188,"citation_normalized_percentile":{"value":0.93720637,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"38","issue":"Web Server","first_page":"W719","last_page":"W723"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.7152618169784546},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.6784388422966003},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5665485858917236},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5565589070320129},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4960115849971771},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4748808741569519},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47369930148124695},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4665954113006592},{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.4554036557674408},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.44785362482070923},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3848148584365845},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3779679536819458},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34137213230133057},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1202269196510315},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09973424673080444}],"concepts":[{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.7152618169784546},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.6784388422966003},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5665485858917236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5565589070320129},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4960115849971771},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4748808741569519},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47369930148124695},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4665954113006592},{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.4554036557674408},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.44785362482070923},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3848148584365845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3779679536819458},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34137213230133057},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1202269196510315},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09973424673080444},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkq453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq453","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W719/3887180/gkq453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20501602","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20501602","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/70ab8fe0-b212-400d-b46c-434569f0388a","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/70ab8fe0-b212-400d-b46c-434569f0388a","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hekkelman, M L, te Beek, T A H, Pettifer, S R, Thorne, D, Attwood, T K & Vriend, G 2010, 'WIWS: A protein structure bioinformatics web service collection', Nucleic acids research., vol. 38, no. 2, gkq453, pp. W719-W723. https://doi.org/10.1093/nar/gkq453","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896166","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2896166","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.354.4229","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.354.4229","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/0e/db/Nucleic_Acids_Res_2010_Jul_1_38(Web_Server_issue)_W719-W723.tar.gz","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W719","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W719","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:repository.ubn.ru.nl:2066/87462","is_oa":false,"landing_page_url":"http://hdl.handle.net/2066/87462","pdf_url":null,"source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 38, Web Server issue, pp. W719-23","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq453","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W719/3887180/gkq453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G5020089996","display_name":"Target practice: informatic and metabolomic assessment of biological network changes and of drug-cell interactions","funder_award_id":"BB/E016065/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G970478890","display_name":null,"funder_award_id":"BB/E016065/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320336410","display_name":"Center for Molecular Biosciences, University of Innsbruck","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156620408.pdf","grobid_xml":"https://content.openalex.org/works/W2156620408.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2008708467","https://openalex.org/W2049334633","https://openalex.org/W2077503061","https://openalex.org/W2092563396","https://openalex.org/W2099099776","https://openalex.org/W2099421181","https://openalex.org/W2118362821","https://openalex.org/W2130479394","https://openalex.org/W2132717858","https://openalex.org/W2138608730","https://openalex.org/W2144081223","https://openalex.org/W2148131811"],"related_works":["https://openalex.org/W1965927827","https://openalex.org/W344666387","https://openalex.org/W1595475086","https://openalex.org/W4232721010","https://openalex.org/W4268596","https://openalex.org/W2382818050","https://openalex.org/W2372204199","https://openalex.org/W2385088822","https://openalex.org/W2136712263","https://openalex.org/W4200253686"],"abstract_inverted_index":{"The":[0,87,114],"WHAT":[1,52],"IF":[2],"molecular-modelling":[3],"and":[4,29,73,77,81,100,105,111,125],"drug":[5],"design":[6,28],"program":[7],"is":[8,127],"widely":[9],"distributed":[10],"in":[11,68],"the":[12,64,95,101],"world":[13],"of":[14,41,51,66,84],"protein":[15,54],"structure":[16,55,62,71],"bioinformatics.":[17],"Although":[18],"originally":[19],"designed":[20],"as":[21,38],"an":[22],"interactive":[23],"application,":[24],"its":[25,36],"highly":[26],"modular":[27],"inbuilt":[30],"control":[31],"language":[32],"have":[33],"recently":[34],"enabled":[35],"deployment":[37],"a":[39,49,82,119],"collection":[40,50],"programmatically":[42],"accessible":[43,89],"web":[44,57,90,115],"services.":[45],"We":[46],"report":[47],"here":[48],"IF-based":[53],"bioinformatics":[56],"services:":[58],"these":[59],"relate":[60],"to":[61],"quality,":[63],"use":[65],"symmetry":[67],"crystal":[69],"structures,":[70],"correction":[72],"optimization,":[74],"adding":[75],"hydrogens":[76],"optimizing":[78],"hydrogen":[79],"bonds":[80],"series":[83],"geometric":[85],"calculations.":[86],"freely":[88],"services":[91,116],"are":[92,106],"based":[93],"on":[94,118],"industry":[96],"standard":[97],"WS-I":[98],"profile":[99],"EMBRACE":[102],"technical":[103],"guidelines,":[104],"available":[107],"via":[108],"both":[109],"REST":[110],"SOAP":[112],"paradigms.":[113],"run":[117],"dedicated":[120],"computational":[121],"cluster;":[122],"their":[123],"function":[124],"availability":[126],"monitored":[128],"daily.":[129]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":6}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
