{"id":"https://openalex.org/W1988971922","doi":"https://doi.org/10.1093/nar/gkq444","title":"SFmap: a web server for motif analysis and prediction of splicing factor binding sites","display_name":"SFmap: a web server for motif analysis and prediction of splicing factor binding sites","publication_year":2010,"publication_date":"2010-05-25","ids":{"openalex":"https://openalex.org/W1988971922","doi":"https://doi.org/10.1093/nar/gkq444","mag":"1988971922","pmid":"https://pubmed.ncbi.nlm.nih.gov/20501600"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq444","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W281/3885990/gkq444.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W281/3885990/gkq444.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112200268","display_name":"Isabela Rivera Paz","orcid":"https://orcid.org/0009-0009-9228-9270"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"I. Paz","raw_affiliation_strings":["Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel","Faculty of Biology, Technion- Israel Institute of Technology, Haifa 32000, Israel"],"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Faculty of Biology, Technion- Israel Institute of Technology, Haifa 32000, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102890387","display_name":"Martin Akerman","orcid":"https://orcid.org/0000-0003-4457-1166"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"M. Akerman","raw_affiliation_strings":["Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA","Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012753791","display_name":"Iris Dror","orcid":"https://orcid.org/0000-0001-7144-2250"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"I. Dror","raw_affiliation_strings":["Faculty of Biology, Technion -Israel Institute of Technology, Haifa 32000, Israel and","Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA"],"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Technion -Israel Institute of Technology, Haifa 32000, Israel and","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068778085","display_name":"Idit Kosti","orcid":"https://orcid.org/0000-0003-2212-5472"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"I. Kosti","raw_affiliation_strings":["Faculty of Biology, Technion -Israel Institute of Technology, Haifa 32000, Israel and","Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA"],"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Technion -Israel Institute of Technology, Haifa 32000, Israel and","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071783473","display_name":"Yael Mandel\u2010Gutfreund","orcid":"https://orcid.org/0000-0002-8946-8237"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Y. Mandel-Gutfreund","raw_affiliation_strings":["Faculty of Biology, Technion -Israel Institute of Technology, Haifa 32000, Israel and","Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA"],"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Technion -Israel Institute of Technology, Haifa 32000, Israel and","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Faculty of Biology, Technion \u2013 Israel Institute of Technology, Haifa 32000, Israel and 2Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522","https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5112200268"],"corresponding_institution_ids":["https://openalex.org/I174306211"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.7108,"has_fulltext":true,"cited_by_count":106,"citation_normalized_percentile":{"value":0.89970369,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"38","issue":"Web Server","first_page":"W281","last_page":"W285"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8136768937110901},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.6286087036132812},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.6027137041091919},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6018952131271362},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5445277690887451},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.517946183681488},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4917304813861847},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.48223361372947693},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.4484368860721588},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44605356454849243},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.44153472781181335},{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.41414177417755127},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3402612507343292},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.28420042991638184},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.246588796377182},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22954246401786804},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.22810429334640503},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.225515216588974},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2085925042629242},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1892940104007721}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8136768937110901},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.6286087036132812},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.6027137041091919},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6018952131271362},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5445277690887451},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.517946183681488},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4917304813861847},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.48223361372947693},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.4484368860721588},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44605356454849243},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.44153472781181335},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.41414177417755127},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3402612507343292},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.28420042991638184},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.246588796377182},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22954246401786804},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.22810429334640503},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.225515216588974},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2085925042629242},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1892940104007721}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkq444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq444","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W281/3885990/gkq444.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20501600","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20501600","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:15503","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Paper"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W281","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W281","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896136","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq444","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq444","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W281/3885990/gkq444.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7200000286102295}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1988971922.pdf","grobid_xml":"https://content.openalex.org/works/W1988971922.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1504845338","https://openalex.org/W1913751664","https://openalex.org/W2012827002","https://openalex.org/W2013235753","https://openalex.org/W2014982561","https://openalex.org/W2038921819","https://openalex.org/W2040481343","https://openalex.org/W2079058841","https://openalex.org/W2090335524","https://openalex.org/W2095998476","https://openalex.org/W2107754763","https://openalex.org/W2113525941","https://openalex.org/W2123950820","https://openalex.org/W2127640118","https://openalex.org/W2129682060","https://openalex.org/W2136145671","https://openalex.org/W2142434304","https://openalex.org/W2147781659","https://openalex.org/W2150812970","https://openalex.org/W2157344394","https://openalex.org/W2157567137","https://openalex.org/W2916408032"],"related_works":["https://openalex.org/W2105364679","https://openalex.org/W2181549235","https://openalex.org/W2135668486","https://openalex.org/W1996516710","https://openalex.org/W2805661590","https://openalex.org/W1973727281","https://openalex.org/W2108893546","https://openalex.org/W2899474303","https://openalex.org/W2046212479","https://openalex.org/W4313374487"],"abstract_inverted_index":{"Alternative":[0],"splicing":[1,26],"(AS)":[2],"is":[3,38,81],"a":[4,39,62,82,87,100,105,110,137,142],"post-transcriptional":[5],"process":[6],"considered":[7],"to":[8,31],"be":[9,97],"responsible":[10],"for":[11,42,61,79,113],"the":[12,35,54,129],"huge":[13],"diversity":[14],"of":[15,89,116],"proteins":[16],"in":[17,48,91,123],"higher":[18],"eukaryotes.":[19],"AS":[20],"events":[21],"are":[22,120,133],"regulated":[23],"by":[24,128],"different":[25],"factors":[27],"(SFs)":[28],"that":[29,94,119],"bind":[30],"sequence":[32,72,85,112],"elements":[33],"on":[34,67],"RNA.":[36],"SFmap":[37,52,80,107,131],"web":[40,144],"server":[41],"predicting":[43],"putative":[44],"SF":[45],"binding":[46,117],"sites":[47],"genomic":[49,84],"data":[50],"(http://sfmap.technion.ac.il).":[51],"implements":[53],"COS(WR)":[55],"algorithm,":[56],"which":[57],"computes":[58],"similarity":[59],"scores":[60],"given":[63,111],"regulatory":[64],"motif":[65],"based":[66],"information":[68],"derived":[69],"from":[70,99],"its":[71,75],"environment":[73],"and":[74,140],"evolutionary":[76],"conservation.":[77],"Input":[78],"human":[83],"or":[86,102,126],"list":[88],"sequences":[90],"FASTA":[92],"format":[93],"can":[95],"either":[96,121],"uploaded":[98],"file":[101,139],"pasted":[103],"into":[104],"window.":[106],"searches":[108],"within":[109],"significant":[114],"hits":[115],"motifs":[118],"stored":[122],"our":[124],"database":[125],"defined":[127],"user.":[130],"results":[132],"provided":[134],"both":[135],"as":[136,141],"text":[138],"graphical":[143],"interface.":[145]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
