{"id":"https://openalex.org/W2031312458","doi":"https://doi.org/10.1093/nar/gkq398","title":"GRAPE: GRaphical Abstracted Protein Explorer","display_name":"GRAPE: GRaphical Abstracted Protein Explorer","publication_year":2010,"publication_date":"2010-05-12","ids":{"openalex":"https://openalex.org/W2031312458","doi":"https://doi.org/10.1093/nar/gkq398","mag":"2031312458","pmid":"https://pubmed.ncbi.nlm.nih.gov/20462864"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq398","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq398","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W595/3864910/gkq398.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W595/3864910/gkq398.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000816378","display_name":"G. Cipriano","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"G. Cipriano","raw_affiliation_strings":["Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715, USA. gregc@cs.wisc.edu","Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715, USA. gregc@cs.wisc.edu","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074002180","display_name":"G.E. Wesenberg","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Wesenberg","raw_affiliation_strings":["Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014799634","display_name":"Terry Grim","orcid":"https://orcid.org/0000-0003-2473-7544"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Grim","raw_affiliation_strings":["Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":null,"display_name":"G. N. Phillips","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. N. Phillips","raw_affiliation_strings":["Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084778474","display_name":"Michael Gleicher","orcid":"https://orcid.org/0000-0003-3295-4071"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Gleicher","raw_affiliation_strings":["Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, University of Wisconsin-Madison Madison, WI 53715 and 2Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA","institution_ids":["https://openalex.org/I135310074"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000816378"],"corresponding_institution_ids":["https://openalex.org/I135310074"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.8133,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.71365964,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"38","issue":"Web Server","first_page":"W595","last_page":"W601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9179999828338623,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.6639354228973389},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6026840209960938},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4699820578098297},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4540948271751404},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4343750774860382},{"id":"https://openalex.org/keywords/scalar","display_name":"Scalar (mathematics)","score":0.4325186014175415},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41568413376808167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3840405344963074},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3359428942203522},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3228440582752228},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.22860437631607056},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.185863196849823},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.11646732687950134},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10537376999855042}],"concepts":[{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.6639354228973389},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6026840209960938},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4699820578098297},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4540948271751404},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4343750774860382},{"id":"https://openalex.org/C57691317","wikidata":"https://www.wikidata.org/wiki/Q1289248","display_name":"Scalar (mathematics)","level":2,"score":0.4325186014175415},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41568413376808167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3840405344963074},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3359428942203522},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3228440582752228},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.22860437631607056},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.185863196849823},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.11646732687950134},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10537376999855042},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq398","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq398","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W595/3864910/gkq398.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20462864","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20462864","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W595","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W595","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896102","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq398","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq398","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq398","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W595/3864910/gkq398.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1354517864","display_name":"BACTER: BRINGING ADVANCED COMPUTATIONAL TECHNIQUES TO ENVIRONMENTAL RESEARCH","funder_award_id":"FG02-04ER25627","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2793034969","display_name":"CDI-Type 1: Physical and Chemical Alignment of Multiple Protein Surfaces","funder_award_id":"0941013","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2797371551","display_name":null,"funder_award_id":"T15LM007359","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2930272664","display_name":"EAGER: Comparative Visualization","funder_award_id":"0946598","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2939438446","display_name":null,"funder_award_id":"DE-FG02-04ER25627","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5219260752","display_name":null,"funder_award_id":"DE-FG","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5954070948","display_name":null,"funder_award_id":"CMMI-","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7085873835","display_name":null,"funder_award_id":"SciDAC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7186324567","display_name":null,"funder_award_id":"DE-FG02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7939070741","display_name":null,"funder_award_id":"LM007359","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8317718518","display_name":null,"funder_award_id":"5T15LM007359","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8684078510","display_name":null,"funder_award_id":"DE-FG02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337391","display_name":"Division of Civil, Mechanical and Manufacturing Innovation","ror":"https://ror.org/028yd4c30"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2031312458.pdf","grobid_xml":"https://content.openalex.org/works/W2031312458.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W65018654","https://openalex.org/W255996521","https://openalex.org/W1975005608","https://openalex.org/W2029582401","https://openalex.org/W2056180063","https://openalex.org/W2093972466","https://openalex.org/W2099803286","https://openalex.org/W2108508060","https://openalex.org/W2120514074","https://openalex.org/W2126615630","https://openalex.org/W2130479394","https://openalex.org/W2132629607","https://openalex.org/W2139924275","https://openalex.org/W2150381702","https://openalex.org/W2154069299","https://openalex.org/W2165565773"],"related_works":["https://openalex.org/W2071749707","https://openalex.org/W372519479","https://openalex.org/W2356683864","https://openalex.org/W2087757637","https://openalex.org/W2988219995","https://openalex.org/W4288023528","https://openalex.org/W2059822836","https://openalex.org/W2418025259","https://openalex.org/W2372584129","https://openalex.org/W2032399540"],"abstract_inverted_index":{"The":[0],"region":[1],"surrounding":[2],"a":[3,61,86,89,136,155,161],"protein,":[4],"known":[5],"as":[6,106],"the":[7,24,78,83,131],"surface":[8,32,84,167],"of":[9,26,35,71,80,82,85,122,130],"interaction":[10],"or":[11,59],"molecular":[12,132],"surface,":[13],"can":[14,38],"provide":[15,154],"valuable":[16],"insight":[17],"into":[18],"its":[19,165],"function.":[20],"Unfortunately,":[21],"due":[22],"to":[23,49,67,113,143,158],"complexity":[25],"both":[27,150,160],"their":[28,31],"geometry":[29],"and":[30,41,43,96,109,147,164],"fields,":[33,104],"study":[34],"these":[36],"surfaces":[37,75],"be":[39,47],"slow":[40],"difficult":[42],"important":[44],"features":[45],"may":[46],"hard":[48],"identify.":[50],"Here,":[51],"we":[52],"describe":[53],"our":[54],"GRaphical":[55],"Abstracted":[56,152],"Protein":[57],"Explorer,":[58],"GRAPE,":[60],"web":[62],"server":[63],"that":[64,92,140],"allows":[65,141],"users":[66,142],"explore":[68],"abstracted":[69,74],"representations":[70],"proteins.":[72],"These":[73],"effectively":[76],"reduce":[77,115],"level":[79],"detail":[81],"macromolecule,":[87],"using":[88],"specialized":[90],"algorithm":[91],"removes":[93],"small":[94],"bumps":[95],"pockets,":[97],"while":[98],"preserving":[99],"large-scale":[100],"structural":[101],"features.":[102],"Scalar":[103],"such":[105],"electrostatic":[107],"potential":[108],"hydropathy,":[110],"are":[111],"smoothed":[112],"further":[114],"visual":[116],"complexity.":[117],"This":[118],"entirely":[119],"new":[120],"way":[121,157],"looking":[123],"at":[124,174],"proteins":[125],"complements":[126],"more":[127],"traditional":[128],"views":[129,153],"surface.":[133],"GRAPE":[134,170],"includes":[135],"thin":[137],"3D":[138],"viewer":[139],"quickly":[144],"flip":[145],"back":[146],"forth":[148],"between":[149],"views.":[151],"fast":[156],"assess":[159],"molecule's":[162],"shape":[163],"different":[166],"field":[168],"distributions.":[169],"is":[171],"freely":[172],"available":[173],"http://grape.uwbacter.org.":[175]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}