{"id":"https://openalex.org/W1984300444","doi":"https://doi.org/10.1093/nar/gkq315","title":"G-language genome analysis environment with REST and SOAP web service interfaces","display_name":"G-language genome analysis environment with REST and SOAP web service interfaces","publication_year":2010,"publication_date":"2010-05-03","ids":{"openalex":"https://openalex.org/W1984300444","doi":"https://doi.org/10.1093/nar/gkq315","mag":"1984300444","pmid":"https://pubmed.ncbi.nlm.nih.gov/20439313"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq315","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq315","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkq315","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069148446","display_name":"Kazuharu Arakawa","orcid":"https://orcid.org/0000-0002-2893-4919"},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Arakawa","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Fujisawa 252-8520, Japan. gaou@sfc.keio.ac.jp","Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa 252-8520, Japan. gaou@sfc.keio.ac.jp","institution_ids":["https://openalex.org/I4210141715"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046140007","display_name":"Nobuhiro Kido","orcid":null},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"N. Kido","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063773615","display_name":"Kazuki Oshita","orcid":null},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Oshita","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015575713","display_name":"Masaru Tomita","orcid":"https://orcid.org/0000-0003-3423-377X"},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Tomita","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210141715"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.6712,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.67822815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"38","issue":"Web Server","first_page":"W700","last_page":"W705"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.8569198846817017},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6486778259277344},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6434550881385803},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6155697703361511},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5535910725593567},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4329332113265991},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.17838001251220703}],"concepts":[{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.8569198846817017},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6486778259277344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6434550881385803},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6155697703361511},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5535910725593567},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4329332113265991},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17838001251220703}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkq315","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq315","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20439313","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20439313","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W700","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W700","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896103","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq315","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq315","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq315","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322443","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W68942307","https://openalex.org/W1543459401","https://openalex.org/W1585912603","https://openalex.org/W1637201493","https://openalex.org/W1978294135","https://openalex.org/W1980602152","https://openalex.org/W1983096870","https://openalex.org/W1996423252","https://openalex.org/W2018590530","https://openalex.org/W2025009249","https://openalex.org/W2054251921","https://openalex.org/W2074741614","https://openalex.org/W2100434585","https://openalex.org/W2110400517","https://openalex.org/W2123261759","https://openalex.org/W2131294836","https://openalex.org/W2137653635","https://openalex.org/W2142549205","https://openalex.org/W2143543488","https://openalex.org/W2148757270","https://openalex.org/W2150934173","https://openalex.org/W2160317546","https://openalex.org/W4251364655"],"related_works":["https://openalex.org/W1965927827","https://openalex.org/W344666387","https://openalex.org/W1595475086","https://openalex.org/W4232721010","https://openalex.org/W4268596","https://openalex.org/W2382818050","https://openalex.org/W2372204199","https://openalex.org/W2385088822","https://openalex.org/W2136712263","https://openalex.org/W1991254288"],"abstract_inverted_index":{"G-language":[0,88],"genome":[1],"analysis":[2,15,32,100,149],"environment":[3],"(G-language":[4],"GAE)":[5],"contains":[6],"more":[7],"than":[8],"100":[9],"programs":[10,20,67,174],"that":[11],"focus":[12],"on":[13],"the":[14,22,38,87,112,116,129,168,173],"of":[16,24,29,33,40,44,49,54,62,86],"bacterial":[17],"genomes,":[18],"including":[19],"for":[21,65],"identification":[23],"binding":[25],"sites":[26,125],"by":[27,68,104,131],"means":[28],"information":[30],"theory,":[31],"nucleotide":[34],"composition":[35],"bias":[36,46],"and":[37,47,52,71,122,178],"distribution":[39],"particular":[41],"oligonucleotides,":[42],"calculation":[43],"codon":[45],"prediction":[48],"expression":[50],"levels,":[51],"visualization":[53],"genomic":[55],"information.":[56],"We":[57],"have":[58],"provided":[59],"a":[60],"collection":[61],"web":[63,124],"services":[64,177],"these":[66,135],"utilizing":[69],"REST":[70,75],"SOAP":[72,138,152],"technologies.":[73],"The":[74,137,151],"interface,":[76],"available":[77,140],"at":[78,141],"http://rest.g-language.org/,":[79],"provides":[80],"access":[81,111,146],"to":[82,134,147,171],"all":[83],"145":[84],"functions":[85,91,101,113,130],"GAE.":[89],"These":[90],"can":[92,110,126,159],"be":[93,160],"accessed":[94],"from":[95],"other":[96,176],"online":[97],"resources.":[98],"All":[99],"are":[102],"represented":[103],"unique":[105],"universal":[106],"resource":[107,119],"identifiers.":[108],"Users":[109],"directly":[114],"via":[115],"corresponding":[117],"universe":[118],"locators":[120],"(URLs),":[121],"biological":[123],"readily":[127,161],"embed":[128],"simply":[132],"linking":[133],"URLs.":[136],"services,":[139],"http://www.g-language.org/wiki/soap/,":[142],"provide":[143],"language-independent":[144],"programmatic":[145],"77":[148],"programs.":[150],"service":[153],"Web":[154],"Services":[155],"Definition":[156],"Language":[157],"file":[158],"loaded":[162],"into":[163],"graphical":[164],"clients":[165],"such":[166],"as":[167],"Taverna":[169],"workbench":[170],"integrate":[172],"with":[175],"workflows.":[179]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
