{"id":"https://openalex.org/W2104916446","doi":"https://doi.org/10.1093/nar/gkq300","title":"PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach","display_name":"PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach","publication_year":2010,"publication_date":"2010-04-29","ids":{"openalex":"https://openalex.org/W2104916446","doi":"https://doi.org/10.1093/nar/gkq300","mag":"2104916446","pmid":"https://pubmed.ncbi.nlm.nih.gov/20430828"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkq300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq300","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W609/16771350/gkq300.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W609/16771350/gkq300.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100359299","display_name":"Xiaofeng Liu","orcid":"https://orcid.org/0000-0003-0648-4897"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofeng Liu","raw_affiliation_strings":["Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China","institution_ids":["https://openalex.org/I4210112820","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088785058","display_name":"Sisheng Ouyang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sisheng Ouyang","raw_affiliation_strings":["CAS - Shanghai Institute of Materia Medica"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAS - Shanghai Institute of Materia Medica","institution_ids":["https://openalex.org/I4210112820"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039955201","display_name":"Biao Yu","orcid":"https://orcid.org/0000-0002-3607-578X"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Biao Yu","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101575063","display_name":"Yabo Liu","orcid":"https://orcid.org/0000-0001-8583-5178"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yabo Liu","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102892550","display_name":"Kai Huang","orcid":"https://orcid.org/0000-0001-9857-654X"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Huang","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088265807","display_name":"Jiayu Gong","orcid":"https://orcid.org/0009-0002-0837-2725"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayu Gong","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005930092","display_name":"Siyuan Zheng","orcid":"https://orcid.org/0000-0002-1031-9424"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Siyuan Zheng","raw_affiliation_strings":["Bioinformatics & Computational Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics & Computational Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100319820","display_name":"Zhihua Li","orcid":"https://orcid.org/0000-0001-6564-6927"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihua Li","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100688144","display_name":"Honglin Li","orcid":"https://orcid.org/0000-0003-2270-1900"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Honglin Li","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001392142","display_name":"Hualiang Jiang","orcid":"https://orcid.org/0000-0003-0656-6315"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hualiang Jiang","raw_affiliation_strings":["East China University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China University of Science and Technology","institution_ids":["https://openalex.org/I143593769"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":16.1465,"has_fulltext":false,"cited_by_count":939,"citation_normalized_percentile":{"value":0.99441671,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"suppl_2","first_page":"W609","last_page":"W614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacophore","display_name":"Pharmacophore","score":0.9621782302856445},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.9107446074485779},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6002480983734131},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5921576619148254},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5661815404891968},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5542504191398621},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5246332287788391},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5243180990219116},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.48765337467193604},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.432331383228302},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4029020369052887},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35765954852104187},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34828829765319824},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.22822099924087524},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.19916632771492004},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12117835879325867},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11315131187438965},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08880743384361267}],"concepts":[{"id":"https://openalex.org/C56173144","wikidata":"https://www.wikidata.org/wiki/Q1539893","display_name":"Pharmacophore","level":2,"score":0.9621782302856445},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.9107446074485779},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6002480983734131},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5921576619148254},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5661815404891968},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5542504191398621},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5246332287788391},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5243180990219116},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.48765337467193604},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.432331383228302},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4029020369052887},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35765954852104187},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34828829765319824},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.22822099924087524},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.19916632771492004},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12117835879325867},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11315131187438965},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08880743384361267},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013629","descriptor_name":"Tamoxifen","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D013629","descriptor_name":"Tamoxifen","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D013629","descriptor_name":"Tamoxifen","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018931","descriptor_name":"Antineoplastic Agents, Hormonal","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D018931","descriptor_name":"Antineoplastic Agents, Hormonal","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D018931","descriptor_name":"Antineoplastic Agents, Hormonal","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkq300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq300","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W609/16771350/gkq300.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:20430828","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20430828","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.885.6359","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.885.6359","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/38/suppl_2/W609.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.897.8013","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.897.8013","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2010/04/29/nar.gkq300.full.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_2/W609","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_2/W609","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2896160","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkq300","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkq300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkq300","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_2/W609/16771350/gkq300.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W66797451","https://openalex.org/W107985703","https://openalex.org/W1623301431","https://openalex.org/W1875906722","https://openalex.org/W1965577964","https://openalex.org/W1968682237","https://openalex.org/W1981641775","https://openalex.org/W1995789501","https://openalex.org/W1996528078","https://openalex.org/W2009313526","https://openalex.org/W2015461838","https://openalex.org/W2025956185","https://openalex.org/W2026482590","https://openalex.org/W2026647045","https://openalex.org/W2033293438","https://openalex.org/W2049324167","https://openalex.org/W2052921326","https://openalex.org/W2054668663","https://openalex.org/W2055100052","https://openalex.org/W2055147198","https://openalex.org/W2059070336","https://openalex.org/W2059585768","https://openalex.org/W2074192927","https://openalex.org/W2074370114","https://openalex.org/W2092198908","https://openalex.org/W2092285329","https://openalex.org/W2096864392","https://openalex.org/W2101373870","https://openalex.org/W2108155748","https://openalex.org/W2127511865","https://openalex.org/W2130479394","https://openalex.org/W2132192652","https://openalex.org/W2135601955","https://openalex.org/W2137507165","https://openalex.org/W2142969714","https://openalex.org/W2153341679","https://openalex.org/W2154896031","https://openalex.org/W2161062388","https://openalex.org/W2162011385","https://openalex.org/W2171482501","https://openalex.org/W2208203352","https://openalex.org/W2413333295","https://openalex.org/W4211083314","https://openalex.org/W6604353192","https://openalex.org/W6636351185","https://openalex.org/W6681383307"],"related_works":["https://openalex.org/W4210753812","https://openalex.org/W3092814660","https://openalex.org/W2770470780","https://openalex.org/W4383218522","https://openalex.org/W3097577508","https://openalex.org/W2003194288","https://openalex.org/W3014188849","https://openalex.org/W3047027651","https://openalex.org/W2320246267","https://openalex.org/W2084622760"],"abstract_inverted_index":{"In":[0],"silico":[1],"drug":[2,22,147,159],"target":[3,37,51,74,101,148,189],"identification,":[4],"which":[5,58],"includes":[6],"many":[7],"distinct":[8],"algorithms":[9],"for":[10,66,80,103],"finding":[11,43,232],"disease":[12],"genes":[13],"and":[14,53,145,180,205,216],"proteins,":[15],"is":[16,39,59,76,91,250],"the":[17,21,26,30,34,44,49,60,104,138,165,170,175,182,202,224,233,237,243],"first":[18],"step":[19],"in":[20,141,178,231,242],"discovery":[23],"pipeline.":[24],"When":[25],"3D":[27],"structures":[28],"of":[29,36,63,130,169,247],"targets":[31,139,160,235],"are":[32,198],"available,":[33],"problem":[35],"identification":[38],"usually":[40],"converted":[41],"to":[42,69,98,222],"best":[45,166],"interaction":[46],"mode":[47],"between":[48],"potential":[50,100,146],"candidates":[52,102,241],"small":[54,106],"molecule":[55,68,172],"probes.":[56],"Pharmacophore,":[57],"spatial":[61],"arrangement":[62],"features":[64],"essential":[65],"a":[67,72,92,126],"interact":[70],"with":[71,116,187],"specific":[73],"receptor,":[75],"an":[77],"alternative":[78],"method":[79],"achieving":[81],"this":[82],"goal":[83],"apart":[84],"from":[85,136,201],"molecular":[86],"docking":[87],"method.":[88],"PharmMapper":[89,124,162,211,249],"server":[90,96],"freely":[93],"accessed":[94],"web":[95],"designed":[97],"identify":[99],"given":[105],"molecules":[107],"(drugs,":[108],"natural":[109],"products":[110],"or":[111],"other":[112],"newly":[113],"discovered":[114],"compounds":[115],"unidentified":[117],"binding":[118],"targets)":[119],"using":[120],"pharmacophore":[121,131,154,176,240],"mapping":[122,167,209],"approach.":[123],"hosts":[125],"large,":[127],"in-house":[128],"repertoire":[129],"database":[132],"(namely":[133],"PharmTargetDB)":[134],"annotated":[135],"all":[137,174],"information":[140],"TargetBank,":[142],"BindingDB,":[143],"DrugBank":[144],"database,":[149],"including":[150],"over":[151,157],"7000":[152],"receptor-based":[153],"models":[155,177],"(covering":[156],"1500":[158],"information).":[161],"automatically":[163],"finds":[164],"poses":[168,197],"query":[171],"against":[173],"PharmTargetDB":[179],"lists":[181],"top":[183,238],"N":[184],"best-fitted":[185],"hits":[186],"appropriate":[188],"annotations,":[190],"as":[191,193],"well":[192],"respective":[194],"molecule's":[195],"aligned":[196],"presented.":[199],"Benefited":[200],"highly":[203],"efficient":[204],"robust":[206],"triangle":[207],"hashing":[208],"method,":[210],"bears":[212],"high":[213],"throughput":[214],"ability":[215],"only":[217],"costs":[218],"1":[219],"h":[220],"averagely":[221],"screen":[223],"whole":[225],"PharmTargetDB.":[226],"The":[227],"protocol":[228],"was":[229],"successful":[230],"proper":[234],"among":[236],"300":[239],"retrospective":[244],"benchmarking":[245],"test":[246],"tamoxifen.":[248],"available":[251],"at":[252],"http://59.78.96.61/pharmmapper.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":54},{"year":2025,"cited_by_count":125},{"year":2024,"cited_by_count":124},{"year":2023,"cited_by_count":96},{"year":2022,"cited_by_count":96},{"year":2021,"cited_by_count":85},{"year":2020,"cited_by_count":63},{"year":2019,"cited_by_count":46},{"year":2018,"cited_by_count":53},{"year":2017,"cited_by_count":48},{"year":2016,"cited_by_count":47},{"year":2015,"cited_by_count":25},{"year":2014,"cited_by_count":30},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":17}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
